RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA698538" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA698538 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7059850 7059850 PRJNA698538_S_NODE_14926_length_313_cov_1.866667_g14760_i0 PRJNA698538 14926 313 1.866667 5.84266771 Korotnevella jeppesenii 1678066 Discosea other_Eukaryota 556 5.09e-154   NTclustered gi|861553759|gb|KP719186.1| 1678066 g14760 i0 98.726 78.8083067092652 314 2 100 2 1 313 137 449 Korotnevella jeppesenii strain A4DVDPB clone 4 small subunit ribosomal RNA gene, partial sequence blastn 24667 556 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella jeppesenii
21083670 21083670 PRJNA698538_S_NODE_15997_length_306_cov_3.618026_g15831_i0 PRJNA698538 15997 306 3.618026 11.07115956 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 165 2.3499999999999996e-47   NR XP_004338432.1 1257118 g15831 i0 87 19.8039215686275 92 12 90.2 0 306 31 280 371 XP_004338432.1 uncharacterized protein ACA1_320830 [Acanthamoeba castellanii str. Neff] diamond 6060 165 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27714950 27714950 PRJNA698538_S_NODE_3024_length_467_cov_2.736041_g2858_i0 PRJNA698538 3024 467 2.736041 12.77731147 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 115 8.29e-28   NR XP_004339668.1 1257118 g2858 i0 64.4 2.20985010706638 90 23 52 1 456 214 211 300 XP_004339668.1 Ras subfamily protein, putative [Acanthamoeba castellanii str. Neff] diamond 1032 115 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27809443 27809443 PRJNA698538_S_NODE_3144_length_462_cov_6.277635_g2978_i0 PRJNA698538 3144 462 6.277635 29.0026737 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47 0.00228   NR XP_004344608.1 1257118 g2978 i0 60.5 0.487012987012987 38 15 24.7 0 459 346 34 71 XP_004344608.1 60s Acidic ribosomal protein [Acanthamoeba castellanii str. Neff] diamond 225 47 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29766692 29766692 PRJNA698538_S_NODE_18291_length_293_cov_1.400000_g18125_i0 PRJNA698538 18291 293 1.4 4.102 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.1 8.4e-19   NR XP_004338777.1 1257118 g18125 i0 52.9 0.716723549488055 70 33 71.7 0 293 84 52 121 XP_004338777.1 uncharacterized protein ACA1_382330 [Acanthamoeba castellanii str. Neff] diamond 210 85.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30493529 30493529 PRJNA698538_S_NODE_30453_length_238_cov_2.660606_g30287_i0 PRJNA698538 30453 238 2.660606 6.33224228 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.5 2.95e-4   NR XP_004368283.1 1257118 g30287 i0 56.7 0.378151260504202 30 13 37.8 0 225 136 258 287 XP_004368283.1 uncharacterized protein ACA1_296260 [Acanthamoeba castellanii str. Neff] diamond 90 48.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32895146 32895146 PRJNA698538_S_NODE_25880_length_254_cov_3.220994_g25714_i0 PRJNA698538 25880 254 3.220994 8.18132476 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 105 1.2e-25   NR XP_004333642.1 1257118 g25714 i0 59 0.980314960629921 83 33 96.9 1 246 1 76 158 XP_004333642.1 uncharacterized protein ACA1_259530 [Acanthamoeba castellanii str. Neff] diamond 249 105 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;