RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA698538", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 10 ✖

tax_kingdom 1

  • Pseudomonadati · 10 ✖

bioproject 1

  • PRJNA698538 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9609672 9609672 PRJNA698538_S_NODE_11788_length_335_cov_1.763359_g11622_i0 PRJNA698538 11788 335 1.763359 5.90725265 Helicobacter aurati 137778 Bacteria Bacteria 590 5.409999999999999e-164   NTclustered gi|50957156|gb|AY596241.1| 137778 g11622 i0 98.507 140.671641791045 335 4 100 1 1 335 616 949 Helicobacter aurati strain ATCC BBA-1 23S ribosomal RNA gene, partial sequence blastn 47125 590 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter aurati
21083823 21083823 PRJNA698538_S_NODE_25857_length_254_cov_5.243094_g25691_i0 PRJNA698538 25857 254 5.243094 13.31745876 Malaciobacter marinus 505249 Bacteria Bacteria 52.8 0.023   NTclustered gi|1474785413|gb|CP032101.1| 505249 g25691 i0 100 0.110236220472441 28 0 11 0 93 120 1771318 1771291 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus
21084005 21084005 PRJNA698538_S_NODE_9377_length_355_cov_2.946809_g9211_i0 PRJNA698538 9377 355 2.946809 10.46117195 Sulfurovum sp. XGS-02 2925411 Bacteria Bacteria 58.4 7.22e-4   NTclustered gi|2233050326|gb|CP093312.1| 2925411 g9211 i0 94.595 0.284507042253521 37 2 10 0 43 79 438265 438301 Sulfurovum sp. XGS-02 chromosome, complete genome blastn 101 58.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp. XGS-02
29356453 29356453 PRJNA698538_S_NODE_8749_length_361_cov_3.208333_g8583_i0 PRJNA698538 8749 361 3.208333 11.58208213 Aliarcobacter cryaerophilus 28198 Bacteria Bacteria 97.8 2.92e-21   NR WP_260962730.1 28198 g8583 i0 48.2 1.82825484764543 110 50 86.4 4 317 6 217 325 WP_260962730.1 TaqI-like C-terminal specificity domain-containing protein [Aliarcobacter cryaerophilus] diamond 660 97.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
29514074 29514074 PRJNA698538_S_NODE_24670_length_260_cov_1.647059_g24504_i0 PRJNA698538 24670 260 1.647059 4.2823534 Helicobacter pylori 210 Bacteria Bacteria 47.4 9.47e-5   NR GAA8807851.1 210 g24504 i0 69.7 0.761538461538461 33 10 38.1 0 162 64 25 57 GAA8807851.1 hypothetical protein Kyoto149A_2760 [Helicobacter pylori] diamond 198 47.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30082536 30082536 PRJNA698538_S_NODE_2332_length_503_cov_2.406977_g2166_i0 PRJNA698538 2332 503 2.406977 12.10709431 Helicobacter pylori 210 Bacteria Bacteria 90.1 1.1e-19   NR GAA9248560.1 210 g2166 i0 58.7 2.43936381709742 75 31 44.7 0 234 10 25 99 GAA9248560.1 hypothetical protein Kyoto199A_1460 [Helicobacter pylori] diamond 1227 90.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30525018 30525018 PRJNA698538_S_NODE_21473_length_276_cov_1.418719_g21307_i0 PRJNA698538 21473 276 1.418719 3.91566444 Helicobacter pylori 210 Bacteria Bacteria 43.5 0.00225   NR GAA9068008.1 210 g21307 i0 47.5 0.434782608695652 40 20 42.4 1 72 188 2 41 GAA9068008.1 hypothetical protein Kyoto184A_06030 [Helicobacter pylori] diamond 120 43.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31409992 31409992 PRJNA698538_S_NODE_25256_length_257_cov_2.625000_g25090_i0 PRJNA698538 25256 257 2.625 6.74625 Helicobacter pylori 210 Bacteria Bacteria 51.2 5.43e-6   NR GAA8795331.1 210 g25090 i0 61.4 0.817120622568093 70 17 74.7 5 206 15 2 67 GAA8795331.1 hypothetical protein Kyoto149A_0020 [Helicobacter pylori] diamond 210 51.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31662805 31662805 PRJNA698538_S_NODE_29297_length_243_cov_1.358824_g29131_i0 PRJNA698538 29297 243 1.358824 3.30194232 Helicobacter pylori 210 Bacteria Bacteria 45.1 0.0014   NR GAA8425757.1 210 g29131 i0 58.5 0.506172839506173 41 17 50.6 0 142 20 62 102 GAA8425757.1 hypothetical protein Hpkin77_14910 [Helicobacter pylori] diamond 123 45.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32137571 32137571 PRJNA698538_S_NODE_25798_length_255_cov_1.269231_g25632_i0 PRJNA698538 25798 255 1.269231 3.23653905 Helicobacter pylori 210 Bacteria Bacteria 43.1 0.00412   NR GAA8950436.1 210 g25632 i0 38.5 1.54117647058824 65 40 76.5 0 250 56 1 65 GAA8950436.1 hypothetical protein Kyoto181A_1530 [Helicobacter pylori] diamond 393 43.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;