RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA698538" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA698538 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10885444 10885444 PRJNA698538_S_NODE_21589_length_275_cov_2.648515_g21423_i0 PRJNA698538 21589 275 2.648515 7.28341625 Haematococcus lacustris 44745 Plants Plants 508 1.2499999999999999e-139   NTclustered gi|1279575454|gb|MF683078.1| 44745 g21423 i0 100 618.563636363636 275 0 100 0 1 275 3300 3026 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 170105 508 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
30082538 30082538 PRJNA698538_S_NODE_3252_length_458_cov_2.654545_g3086_i0 PRJNA698538 3252 458 2.654545 12.1578161 Coccomyxa sp. Obi 2315456 Plants Plants 52.8 1.11e-4   NR BDA47518.1 2315456 g3086 i0 60 0.903930131004367 40 16 26.2 0 434 315 115 154 BDA47518.1 probable nuclear cap-binding protein subunit 2 at N-terminal half [Coccomyxa sp. Obi] diamond 414 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
31568336 31568336 PRJNA698538_S_NODE_31976_length_217_cov_4.388889_g31810_i0 PRJNA698538 31976 217 4.388889 9.52388913 Pedinophyceae sp. YPF-7 765719 Plants Plants 80.9 1.8e-17   NR CAG9465025.1 765719 g31810 i0 63.5 0.870967741935484 63 23 87.1 0 1 189 71 133 CAG9465025.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 189 80.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;