RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA698538", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA698538 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12160402 12160402 PRJNA698538_S_NODE_13010_length_326_cov_1.118577_g12844_i0 PRJNA698538 13010 326 1.118577 3.64656102 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.031   NTclustered gi|820700576|tpe|LN714500.1| 432359 g12844 i0 100 0.0858895705521472 28 0 9 0 213 240 5764249 5764222 TPA_asm: Toxoplasma gondii VEG, chromosome chrX, complete genome blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
30694220 30694220 PRJNA698538_S_NODE_6553_length_386_cov_4.019169_g6387_i0 PRJNA698538 6553 386 4.019169 15.51399234 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 148 5.45e-39   NR KAK1936482.1 32595 g6387 i0 77.3 15.0388601036269 97 21 75.4 1 385 95 513 608 KAK1936482.1 putative peptidyl-prolyl cis-trans isomerase [Babesia divergens] diamond 5805 149 0.993288590604027 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia divergens
32085377 32085377 PRJNA698538_S_NODE_32338_length_206_cov_4.631579_g32172_i0 PRJNA698538 32338 206 4.631579 9.54105274 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 72 3.54e-13   NR SCM25234.1 5826 g32172 i0 45.6 4.95145631067961 68 37 99 0 1 204 159 226 SCM25234.1 diphthine--ammonia ligase, putative [Plasmodium chabaudi adami] diamond 1020 72 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;