RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA695273" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA695273 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28314438 28314438 PRJNA695273_P_NODE_133546_length_249_cov_0.875000_g132788_i0 PRJNA695273 133546 249 0.875 2.17875 Clonorchis sinensis 79923 Platyhelminthes Platyhelminthes 63.5 1.75e-9   NR GAA50921.1 79923 g132788 i0 61.2 2.36144578313253 49 19 59 0 247 101 272 320 GAA50921.1 aspartate aminotransferase mitochondrial [Clonorchis sinensis] diamond 588 63.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Clonorchis Clonorchis sinensis
29798269 29798269 PRJNA695273_P_NODE_89291_length_292_cov_1.406393_g88533_i0 PRJNA695273 89291 292 1.406393 4.10666756 Clonorchis sinensis 79923 Platyhelminthes Platyhelminthes 81.6 2.42e-17   NR KAG5452469.1 79923 g88533 i0 47.6 0.842465753424658 82 38 80.1 2 234 1 20 100 KAG5452469.1 putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Clonorchis sinensis] diamond 246 81.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Clonorchis Clonorchis sinensis
29861542 29861542 PRJNA695273_P_NODE_146451_length_245_cov_0.895349_g145693_i0 PRJNA695273 146451 245 0.895349 2.19360505 Fasciola gigantica 46835 Platyhelminthes Platyhelminthes 72.4 1.18e-14   NR TPP63765.1 46835 g145693 i0 47.1 0.83265306122449 68 36 83.3 0 243 40 8 75 TPP63765.1 hypothetical protein FGIG_07339 [Fasciola gigantica] diamond 204 72.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciola Fasciola gigantica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;