RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA695273" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA695273 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3733499 3733499 PRJNA695273_P_NODE_104463_length_275_cov_1.039604_g103705_i0 PRJNA695273 104463 275 1.039604 2.858911 Mesomycoplasma 2923352 Bacteria Bacteria 501 2.0899999999999996e-137   NTclustered gi|1563681465|emb|LR214949.1| 2100 g103705 i0 99.636 15.0145454545455 275 0 100 1 1 275 647578 647305 Mycoplasma hyorhinis strain NCTC10121 genome assembly, plasmid: 3 blastn 4129 501 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
7055840 7055840 PRJNA695273_P_NODE_146746_length_245_cov_0.895349_g145988_i0 PRJNA695273 146746 245 0.895349 2.19360505 Spiroplasma chrysopicola 216933 Bacteria Bacteria 52.8 0.022   NTclustered gi|506965883|gb|CP005077.1| 1276227 g145988 i0 100 0.114285714285714 28 0 11 0 66 93 1075333 1075306 Spiroplasma chrysopicola DF-1, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma chrysopicola
8835277 8835277 PRJNA695273_P_NODE_162707_length_229_cov_2.307692_g161949_i0 PRJNA695273 162707 229 2.307692 5.28461468 Mollicutes 31969 Bacteria Bacteria 424 3.76e-114   NTclustered gi|1958638505|gb|MW498314.1| 2100 g161949 i0 100 125.393013100437 229 0 100 0 1 229 1108 1336 Mesomycoplasma hyorhinis strain MycSu128 23S ribosomal RNA gene, partial sequence blastn 28715 424 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
13936983 13936983 PRJNA695273_P_NODE_59571_length_354_cov_2.053381_g58813_i0 PRJNA695273 59571 354 2.053381 7.26896874 Mollicutes 31969 Bacteria Bacteria 654 0   NTclustered gi|281186773|gb|GU227378.1| 2100 g58813 i0 100 101.954802259887 354 0 100 0 1 354 994 1347 Mycoplasma hyorhinis strain USP36P 16S ribosomal RNA gene, partial sequence blastn 36092 654 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;