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contig_metadata

17 rows where bioproject = "PRJNA695273" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA695273 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9605977 9605977 PRJNA695273_P_NODE_159288_length_241_cov_0.916667_g158530_i0 PRJNA695273 159288 241 0.916667 2.20916747 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 211 3.38e-50   NTclustered gi|575456455|gb|CP007128.1| 861299 g158530 i0 82.645 25.6348547717842 242 38 99 4 1 240 3304828 3305067 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 6178 211 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
12155502 12155502 PRJNA695273_P_NODE_108010_length_271_cov_1.161616_g107252_i0 PRJNA695273 108010 271 1.161616 3.14797936 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 267 8.149999999999999e-67   NTclustered gi|575456455|gb|CP007128.1| 861299 g107252 i0 84.615 44.9335793357934 273 36 100 6 1 271 3042791 3042523 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 12177 267 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
12157515 12157515 PRJNA695273_P_NODE_50650_length_382_cov_1.242718_g49892_i0 PRJNA695273 50650 382 1.242718 4.74718276 Pseudogemmatithrix 3237678 Bacteria Bacteria 129 7.63e-32   NR MBX9857145.1 2026741 g49892 i0 61.2 10.4371727748691 134 44 99.7 4 382 2 410 542 MBX9857145.1 cation-translocating P-type ATPase [Gemmatimonadaceae bacterium] diamond 3987 130 0.992307692307692 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27272304 27272304 PRJNA695273_P_NODE_128703_length_250_cov_0.870056_g127945_i0 PRJNA695273 128703 250 0.870056 2.17514 Longimicrobium sp. 2029185 Bacteria Bacteria 112 3.41e-27   NR WP_329683072.1 2029185 g127945 i0 80.5 2.952 82 16 98.4 0 247 2 104 185 WP_329683072.1 HEAT repeat domain-containing protein [Longimicrobium sp.] diamond 738 112 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
27883510 27883510 PRJNA695273_P_NODE_79465_length_310_cov_1.299578_g78707_i0 PRJNA695273 79465 310 1.299578 4.0286918 Gemmatimonadota 142182 Bacteria Bacteria 78.6 1.43e-14   NR CAA9346451.1 246130 g78707 i0 43.5 11.2161290322581 92 52 89 0 25 300 123 214 CAA9346451.1 MAG: Chemotaxis protein methyltransferase CheR, partial [uncultured Gemmatimonadaceae bacterium] diamond 3477 79 0.994936708860759 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
27998822 27998822 PRJNA695273_P_NODE_151605_length_243_cov_1.776471_g150847_i0 PRJNA695273 151605 243 1.776471 4.31682453 Longimicrobium sp. 2029185 Bacteria Bacteria 86.7 1.21e-17   NR HEY0037694.1 2029185 g150847 i0 57.5 0.987654320987654 80 33 97.5 1 238 2 297 376 HEY0037694.1 hypothetical protein [Longimicrobium sp.] diamond 240 86.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28736120 28736120 PRJNA695273_P_NODE_159367_length_241_cov_0.916667_g158609_i0 PRJNA695273 159367 241 0.916667 2.20916747 Roseisolibacter 2093335 Bacteria Bacteria 80.9 7.28e-16   NR WP_284352617.1 2014610 g158609 i0 60.8 1.95435684647303 79 30 98.3 1 5 241 21 98 WP_284352617.1 HEAT repeat domain-containing protein [Roseisolibacter agri] diamond 471 80.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
28819237 28819237 PRJNA695273_P_NODE_146028_length_245_cov_0.895349_g145270_i0 PRJNA695273 146028 245 0.895349 2.19360505 Longimicrobium sp. 2029185 Bacteria Bacteria 106 3.2200000000000004e-27   NR HET7462406.1 2029185 g145270 i0 73.5 0.83265306122449 68 18 83.3 0 41 244 1 68 HET7462406.1 hypothetical protein [Longimicrobium sp.] diamond 204 106 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29324670 29324670 PRJNA695273_P_NODE_157289_length_242_cov_0.911243_g156531_i0 PRJNA695273 157289 242 0.911243 2.20520806 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 108 1.1e-25   NR HEX5727049.1 3047548 g156531 i0 65 2.97520661157025 80 28 99.2 0 1 240 21 100 HEX5727049.1 ABC transporter ATP-binding protein [Longimicrobiaceae bacterium] diamond 720 108 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
29671732 29671732 PRJNA695273_P_NODE_100230_length_279_cov_1.980583_g99472_i0 PRJNA695273 100230 279 1.980583 5.52582657 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 43.5 0.0127   NR HEX7240525.1 3047548 g99472 i0 40 0.537634408602151 50 28 53.8 1 95 244 57 104 HEX7240525.1 hypothetical protein [Longimicrobiaceae bacterium] diamond 150 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
30177402 30177402 PRJNA695273_P_NODE_97592_length_282_cov_1.885167_g96834_i0 PRJNA695273 97592 282 1.885167 5.31617094 Longimicrobium sp. 2029185 Bacteria Bacteria 152 3.0299999999999996e-42   NR HYW12242.1 2029185 g96834 i0 83.7 0.978723404255319 92 14 96.8 1 8 280 301 392 HYW12242.1 tetratricopeptide repeat protein [Longimicrobium sp.] diamond 276 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30777822 30777822 PRJNA695273_P_NODE_145014_length_245_cov_1.569767_g144256_i0 PRJNA695273 145014 245 1.569767 3.84592915 Gemmatirosa sp. 2510638 Bacteria Bacteria 47.8 3.21e-4   NR HEY0779335.1 2510638 g144256 i0 71.9 0.759183673469388 32 9 39.2 0 3 98 140 171 HEY0779335.1 FKBP-type peptidyl-prolyl cis-trans isomerase [Gemmatirosa sp.] diamond 186 47.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
30904243 30904243 PRJNA695273_P_NODE_126094_length_251_cov_0.865169_g125336_i0 PRJNA695273 126094 251 0.865169 2.17157419 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 44.3 0.012   NR WP_156799002.1 173480 g125336 i0 63.3 0.358565737051793 30 11 35.9 0 159 248 884 913 WP_156799002.1 hypothetical protein [Gemmatimonas aurantiaca] diamond 90 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
31062409 31062409 PRJNA695273_P_NODE_95175_length_285_cov_1.452830_g94417_i0 PRJNA695273 95175 285 1.45283 4.1405655 Longimicrobiales bacterium 2910168 Bacteria Bacteria 46.2 0.00199   NR HUF76842.1 2910168 g94417 i0 36.8 0.91578947368421 87 51 91.6 3 284 24 61 143 HUF76842.1 hypothetical protein [Longimicrobiales bacterium] diamond 261 46.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
32117203 32117203 PRJNA695273_P_NODE_96818_length_283_cov_1.466667_g96060_i0 PRJNA695273 96818 283 1.466667 4.15066761 Pseudogemmatithrix 3237678 Bacteria Bacteria 139 2.75e-36   NR HRQ77127.1 2026741 g96060 i0 75.6 11.6713780918728 90 22 95.4 0 283 14 319 408 HRQ77127.1 mechanosensitive ion channel family protein [Gemmatimonadaceae bacterium] diamond 3303 139 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32549059 32549059 PRJNA695273_P_NODE_99159_length_281_cov_1.062500_g98401_i0 PRJNA695273 99159 281 1.0625 2.985625 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 48.1 7.2e-4   NR MEX2467906.1 2026742 g98401 i0 50 1.27046263345196 56 21 52.3 1 152 6 4 59 MEX2467906.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [Gemmatimonadota bacterium] diamond 357 48.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32643032 32643032 PRJNA695273_P_NODE_153940_length_243_cov_0.905882_g153182_i0 PRJNA695273 153940 243 0.905882 2.20129326 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 164 1.6e-48   NR HEY7568541.1 2026741 g153182 i0 93.8 0.987654320987654 80 5 98.8 0 3 242 81 160 HEY7568541.1 glycosyltransferase [Gemmatimonadaceae bacterium] diamond 240 164 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;