RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA695273", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 12 ✖

tax_kingdom 1

  • Pseudomonadati · 12 ✖

bioproject 1

  • PRJNA695273 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1954031 1954031 PRJNA695273_P_NODE_36782_length_448_cov_1.232000_g36024_i0 PRJNA695273 36782 448 1.232 5.51936 Desulfosudis oleivorans 181663 Bacteria Bacteria 54.7 0.012   NTclustered gi|158508843|gb|CP000859.1| 96561 g36024 i0 100 0.127232142857143 29 0 6 0 418 446 962766 962738 Desulfococcus oleovorans Hxd3, complete genome blastn 57 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosudaceae Desulfosudis Desulfosudis oleivorans
9606988 9606988 PRJNA695273_P_NODE_61948_length_348_cov_1.225455_g61190_i0 PRJNA695273 61948 348 1.225455 4.2645834 Trichlorobacter ammonificans 2916410 Bacteria Bacteria 120 2.15e-29   NR WP_305732682.1 2916410 g61190 i0 62.5 1.93103448275862 112 42 96.6 0 12 347 123 234 WP_305732682.1 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor [Trichlorobacter ammonificans] diamond 672 120 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Trichlorobacter Trichlorobacter ammonificans
24902653 24902653 PRJNA695273_P_NODE_108340_length_270_cov_1.563452_g107582_i0 PRJNA695273 108340 270 1.563452 4.2213204 Pseudodesulfovibrio mercurii 641491 Bacteria Bacteria 189 1.8099999999999993e-43   NTclustered gi|365906293|gb|CP003220.1| 641491 g107582 i0 82.805 8.05925925925926 221 28 80 10 55 270 2468446 2468231 Pseudodesulfovibrio mercurii strain ND132 chromosome, complete genome blastn 2176 189 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio mercurii
27398879 27398879 PRJNA695273_P_NODE_82123_length_305_cov_1.297414_g81365_i0 PRJNA695273 82123 305 1.297414 3.9571127 Smithella sp. 2053614 Bacteria Bacteria 80.9 4.26e-17   NR MBP7016157.1 2053614 g81365 i0 40.6 1.98688524590164 101 58 98.4 2 300 1 11 110 MBP7016157.1 AhpC/TSA family protein [Smithella sp.] diamond 606 80.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
27872317 27872317 PRJNA695273_P_NODE_136685_length_248_cov_0.880000_g135927_i0 PRJNA695273 136685 248 0.88 2.1824 Desulfobacterales bacterium 2044940 Bacteria Bacteria 46.6 0.00178   NR MDJ0819678.1 2044940 g135927 i0 32.1 0.979838709677419 81 46 91.9 2 230 3 952 1028 MDJ0819678.1 hypothetical protein [Desulfobacterales bacterium] diamond 243 46.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
28314427 28314427 PRJNA695273_P_NODE_111566_length_267_cov_0.876289_g110808_i0 PRJNA695273 111566 267 0.876289 2.33969163 Candidatus Adiutrix sp. 2872164 Bacteria Bacteria 42.7 0.0322   NR MDR3037693.1 2872164 g110808 i0 46.2 0.438202247191011 39 21 43.8 0 150 266 59 97 MDR3037693.1 phosphodiesterase [Candidatus Adiutrix sp.] diamond 117 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Candidatus Adiutricales Candidatus Adiutricaceae Candidatus Adiutrix Candidatus Adiutrix sp.
29115086 29115086 PRJNA695273_P_NODE_64228_length_342_cov_1.557621_g63470_i0 PRJNA695273 64228 342 1.557621 5.32706382 Pseudomonadati 3379134 Bacteria Bacteria 174 7.11e-49   NR WP_081702916.1 1232410 g63470 i0 75.2 6.92105263157895 113 27 99.1 1 2 340 255 366 WP_081702916.1 AAA family ATPase [Desulfuromonas sp. TF] diamond 2367 174 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. TF
30304316 30304316 PRJNA695273_P_NODE_139112_length_247_cov_0.885057_g138354_i0 PRJNA695273 139112 247 0.885057 2.18609079 Desulfovibrionaceae bacterium CG1_ 2049043 Bacteria Bacteria 146 1.4199999999999999e-42   NR OIO02299.1 1805130 g138354 i0 90.1 0.983805668016194 81 8 98.4 0 244 2 20 100 OIO02299.1 MAG: DNA-binding protein [Desulfovibrionaceae bacterium CG1_02_65_16] diamond 243 146 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium CG1_02_65_16
31251652 31251652 PRJNA695273_P_NODE_107395_length_271_cov_1.808081_g106637_i0 PRJNA695273 107395 271 1.808081 4.89989951 Deferrisomatales bacterium 2814224 Bacteria Bacteria 47.4 0.00125   NR MDF1553455.1 2814224 g106637 i0 42.9 2.40221402214022 70 36 73.1 1 60 257 352 421 MDF1553455.1 Ig-like domain-containing protein [Deferrisomatales bacterium] diamond 651 47.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Deferrisomatia Deferrisomatales     Deferrisomatales bacterium
32264314 32264314 PRJNA695273_P_NODE_127618_length_251_cov_0.865169_g126860_i0 PRJNA695273 127618 251 0.865169 2.17157419 Syntrophaceae bacterium 2052184 Bacteria Bacteria 71.2 4.63e-13   NR MDR3605430.1 2052184 g126860 i0 45.7 0.968127490039841 81 44 96.8 0 248 6 88 168 MDR3605430.1 IS630 family transposase [Syntrophaceae bacterium] diamond 243 71.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae   Syntrophaceae bacterium
32454140 32454140 PRJNA695273_P_NODE_136259_length_248_cov_0.880000_g135501_i0 PRJNA695273 136259 248 0.88 2.1824 Syntrophus sp. SKADARSKE-3 3029837 Bacteria Bacteria 145 4.86e-41   NR MDQ5986139.1 3029837 g135501 i0 81.7 1.97177419354839 82 15 99.2 0 2 247 12 93 MDQ5986139.1 hypothetical protein [Syntrophus sp. SKADARSKE-3] diamond 489 145 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus sp. SKADARSKE-3
32580628 32580628 PRJNA695273_P_NODE_83179_length_303_cov_1.339130_g82421_i0 PRJNA695273 83179 303 1.33913 4.0575639 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 115 1.6200000000000003e-27   NR MBS5048610.1 2049043 g82421 i0 62.8 0.930693069306931 94 35 93.1 0 302 21 298 391 MBS5048610.1 cation:proton antiporter [Desulfovibrionaceae bacterium] diamond 282 115 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;