RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA695273" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 20 ✖

bioproject 1

  • PRJNA695273 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8835768 8835768 PRJNA695273_P_NODE_4547_length_1454_cov_1.666184_g4071_i0 PRJNA695273 4547 1454 1.666184 24.22631536 root 1 Root_unresolved Root_unresolved 2669 0   NTclustered gi|216917|dbj|D12983.1|PYWPOL 2261 g4071 i0 99.794 9.29711141678129 1454 3 100 0 1 1454 251 1704 Pyrococcus furiosus pol gene for DNA polymerase, complete cds blastn 13518 2669 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
10111934 10111934 PRJNA695273_P_NODE_74128_length_320_cov_2.850202_g73370_i0 PRJNA695273 74128 320 2.850202 9.1206464 Thermococcus 2263 Archaea Archaea 544 4.0599999999999997e-150   NTclustered gi|189908859|gb|EU571472.1| 342948 g73370 i0 100 1.8375 294 0 92 0 25 318 4 297 Thermococcus onnurineus dITPase gene, complete cds blastn 588 544 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus onnurineus
12661457 12661457 PRJNA695273_P_NODE_13510_length_789_cov_2.428771_g12796_i0 PRJNA695273 13510 789 2.428771 19.16300319 root 1 Root_unresolved Root_unresolved 1297 0   NTclustered gi|216917|dbj|D12983.1|PYWPOL 2261 g12796 i0 99.718 6.23954372623574 708 2 90 0 1 708 1854 2561 Pyrococcus furiosus pol gene for DNA polymerase, complete cds blastn 4923 1297 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
14706919 14706919 PRJNA695273_P_NODE_31572_length_486_cov_1.353511_g30814_i0 PRJNA695273 31572 486 1.353511 6.57806346 Thermococcus siculi 72803 Archaea Archaea 330 2.49e-103   NR WP_088855743.1 72803 g30814 i0 98.1 0.987654320987654 160 3 98.8 0 481 2 355 514 WP_088855743.1 DNA polymerase domain-containing protein [Thermococcus siculi] diamond 480 330 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus siculi
19803516 19803516 PRJNA695273_P_NODE_120156_length_257_cov_0.923913_g119398_i0 PRJNA695273 120156 257 0.923913 2.37445641 Natronococcus wangiae 3068275 Archaea Archaea 276 1.27e-69   NTclustered gi|2563036162|gb|CP132294.1| 3068275 g119398 i0 86.154 2.66147859922179 260 30 100 5 1 257 1433739 1433483 Natronococcus wangiae strain AD-5 chromosome, complete genome blastn 684 276 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus wangiae
24903344 24903344 PRJNA695273_P_NODE_138700_length_247_cov_0.885057_g137942_i0 PRJNA695273 138700 247 0.885057 2.18609079 Natronococcus wangiae 3068275 Archaea Archaea 265 2.63e-66   NTclustered gi|2563036162|gb|CP132294.1| 3068275 g137942 i0 86.122 4.7085020242915 245 34 99 0 1 245 2620132 2619888 Natronococcus wangiae strain AD-5 chromosome, complete genome blastn 1163 265 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus wangiae
26670819 26670819 PRJNA695273_P_NODE_102041_length_277_cov_1.921569_g101283_i0 PRJNA695273 102041 277 1.921569 5.32274613 Candidatus Hadarchaeum sp. 2883567 Archaea Archaea 43.1 0.0298   NR MEM4724845.1 2883567 g101283 i0 46.7 0.487364620938628 45 23 48.7 1 68 202 89 132 MEM4724845.1 flavodoxin family protein [Candidatus Hadarchaeum sp.] diamond 135 43.1 1 Archaea   Methanobacteriati Candidatus Hadarchaeota Candidatus Hadarchaeia Candidatus Hadarchaeales Candidatus Hadarchaeaceae Candidatus Hadarchaeum Candidatus Hadarchaeum sp.
27019384 27019384 PRJNA695273_P_NODE_111542_length_267_cov_0.969072_g110784_i0 PRJNA695273 111542 267 0.969072 2.58742224 Methanosarcina sp. 2213 Archaea Archaea 103 5.42e-25   NR HET8686043.1 2213 g110784 i0 66.2 0.797752808988764 71 23 79.8 1 267 55 159 228 HET8686043.1 hypothetical protein [Methanosarcina sp.] diamond 213 103 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
27746274 27746274 PRJNA695273_P_NODE_162804_length_228_cov_2.477419_g162046_i0 PRJNA695273 162804 228 2.477419 5.64851532 Methanosarcinales archaeon 2250255 Archaea Archaea 87 2.71e-18   NR RYE82365.1 2250255 g162046 i0 51.3 1 76 37 100 0 1 228 173 248 RYE82365.1 MAG: fatty acid desaturase, partial [Methanosarcinales archaeon] diamond 228 87 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
28409114 28409114 PRJNA695273_P_NODE_135946_length_248_cov_0.880000_g135188_i0 PRJNA695273 135946 248 0.88 2.1824 Methanosarcina sp. 2213 Archaea Archaea 147 1.56e-39   NR HET8686717.1 2213 g135188 i0 85.2 0.979838709677419 81 12 98 0 2 244 384 464 HET8686717.1 phage terminase large subunit family protein [Methanosarcina sp.] diamond 243 147 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
28409141 28409141 PRJNA695273_P_NODE_55366_length_367_cov_1.047619_g54608_i0 PRJNA695273 55366 367 1.047619 3.84476173 Methanopyrus kandleri 2320 Archaea Archaea 116 2.6900000000000003e-27   NR 5HM5_A 2320 g54608 i0 98.2 0.931880108991826 57 1 46.6 0 237 67 696 752 5HM5_A Chain A, Topoisomerase V [Methanopyrus kandleri] diamond 342 116 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus kandleri
28787787 28787787 PRJNA695273_P_NODE_108727_length_270_cov_1.233503_g107969_i0 PRJNA695273 108727 270 1.233503 3.3304581 Methanosarcina sp. 2213 Archaea Archaea 125 3e-34   NR HET8686059.1 2213 g107969 i0 66.7 1 90 30 100 0 1 270 35 124 HET8686059.1 hypothetical protein [Methanosarcina sp.] diamond 270 125 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
29324669 29324669 PRJNA695273_P_NODE_156229_length_242_cov_0.911243_g155471_i0 PRJNA695273 156229 242 0.911243 2.20520806 Thermoplasmatota archaeon 2806419 Archaea Archaea 43.5 0.0101   NR MEC8142616.1 2806419 g155471 i0 32.9 0.942148760330578 76 42 94.2 2 1 228 58 124 MEC8142616.1 hypothetical protein [Thermoplasmatota archaeon] diamond 228 43.5 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
29829886 29829886 PRJNA695273_P_NODE_160151_length_241_cov_0.916667_g159393_i0 PRJNA695273 160151 241 0.916667 2.20916747 Methanoregula sp. 2052170 Archaea Archaea 62 1.09e-10   NR WP_373008514.1 2052170 g159393 i0 53.3 1.04564315352697 45 21 56 0 137 3 1 45 WP_373008514.1 hypothetical protein [Methanoregula sp.] diamond 252 62 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
30682822 30682822 PRJNA695273_P_NODE_64373_length_342_cov_1.144981_g63615_i0 PRJNA695273 64373 342 1.144981 3.91583502 Methanobacterium formicicum 2162 Archaea Archaea 71.2 5.92e-12   NR WP_004031174.1 2162 g63615 i0 37.9 1.01754385964912 116 64 96.5 3 340 11 165 278 WP_004031174.1 CPBP family intramembrane glutamic endopeptidase [Methanobacterium formicicum] diamond 348 71.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
30999000 30999000 PRJNA695273_P_NODE_140334_length_247_cov_0.885057_g139576_i0 PRJNA695273 140334 247 0.885057 2.18609079 Methanosarcina sp. 2213 Archaea Archaea 108 9.81e-28   NR HET8686727.1 2213 g139576 i0 61 0.995951417004049 82 32 99.6 0 246 1 33 114 HET8686727.1 hypothetical protein [Methanosarcina sp.] diamond 246 108 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
31947444 31947444 PRJNA695273_P_NODE_106977_length_272_cov_1.201005_g106219_i0 PRJNA695273 106977 272 1.201005 3.2667336 Methanosarcina sp. 2213 Archaea Archaea 139 1.7e-39   NR HET8686716.1 2213 g106219 i0 77.3 0.970588235294118 88 20 97.1 0 8 271 53 140 HET8686716.1 hypothetical protein [Methanosarcina sp.] diamond 264 139 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
32169345 32169345 PRJNA695273_P_NODE_136078_length_248_cov_0.880000_g135320_i0 PRJNA695273 136078 248 0.88 2.1824 Methanobacteriota archaeon 2026739 Archaea Archaea 62 4.33e-9   NR MBR20230.1 2026739 g135320 i0 43.1 0.786290322580645 65 37 78.6 0 247 53 55 119 MBR20230.1 hypothetical protein [Methanobacteriota archaeon] diamond 195 62 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
32422267 32422267 PRJNA695273_P_NODE_156159_length_242_cov_0.911243_g155401_i0 PRJNA695273 156159 242 0.911243 2.20520806 Methanobacteriota archaeon 2026739 Archaea Archaea 67.4 3.56e-11   NR MCH7661327.1 2026739 g155401 i0 75 0.495867768595041 40 10 49.6 0 3 122 219 258 MCH7661327.1 MarR family transcriptional regulator [Methanobacteriota archaeon] diamond 120 67.4 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
32895080 32895080 PRJNA695273_P_NODE_125460_length_251_cov_0.865169_g124702_i0 PRJNA695273 125460 251 0.865169 2.17157419 Methanosarcina sp. 2213 Archaea Archaea 126 7.709999999999999e-34   NR HET8686538.1 2213 g124702 i0 77.1 0.99203187250996006 83 19 99.2 0 1 249 107 189 HET8686538.1 sigma-70 family RNA polymerase sigma factor [Methanosarcina sp.] diamond 249 126 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;