RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA695273", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA695273 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28409141 28409141 PRJNA695273_P_NODE_55366_length_367_cov_1.047619_g54608_i0 PRJNA695273 55366 367 1.047619 3.84476173 Methanopyrus kandleri 2320 Archaea Archaea 116 2.6900000000000003e-27   NR 5HM5_A 2320 g54608 i0 98.2 0.931880108991826 57 1 46.6 0 237 67 696 752 5HM5_A Chain A, Topoisomerase V [Methanopyrus kandleri] diamond 342 116 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus kandleri
30682822 30682822 PRJNA695273_P_NODE_64373_length_342_cov_1.144981_g63615_i0 PRJNA695273 64373 342 1.144981 3.91583502 Methanobacterium formicicum 2162 Archaea Archaea 71.2 5.92e-12   NR WP_004031174.1 2162 g63615 i0 37.9 1.01754385964912 116 64 96.5 3 340 11 165 278 WP_004031174.1 CPBP family intramembrane glutamic endopeptidase [Methanobacterium formicicum] diamond 348 71.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;