RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA695273", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA695273 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5781866 5781866 PRJNA695273_P_NODE_54305_length_370_cov_1.531987_g53547_i0 PRJNA695273 54305 370 1.531987 5.6683519 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 326 1.88e-84   NTclustered gi|423292048|gb|JQ519470.1| 5778 g53547 i0 94.737 75.3945945945946 209 11 56 0 1 209 700 908 Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds blastn 27896 326 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7056218 7056218 PRJNA695273_P_NODE_16266_length_707_cov_14.717666_g15529_i0 PRJNA695273 16266 707 14.717666 104.05389862 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 357 1.34e-93   NTclustered gi|511487963|gb|JX898537.1| 1260765 g15529 i0 80.658 33.2545968882603 486 72 68 21 74 551 1 472 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 23511 357 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
7057109 7057109 PRJNA695273_P_NODE_59326_length_355_cov_1.450355_g58568_i0 PRJNA695273 59326 355 1.450355 5.14876025 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 496 1.29e-135   NTclustered gi|292559443|ref|NC_013986.1| 5778 g58568 i0 92.733 93.312676056338 344 24 97 1 13 355 28294 27951 Hartmannella vermiformis mitochondrion, complete genome blastn 33126 496 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10881977 10881977 PRJNA695273_P_NODE_31389_length_487_cov_2.729469_g30631_i0 PRJNA695273 31389 487 2.729469 13.29251403 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 795 0   NTclustered gi|62910949|gb|AY925001.1| 5778 g30631 i0 96.099 3.56262833675565 487 19 100 0 1 487 557 71 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 1735 795 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11385896 11385896 PRJNA695273_P_NODE_161989_length_235_cov_9.475309_g161231_i0 PRJNA695273 161989 235 9.475309 22.26697615 Vermamoeba 1260114 Tubulinea other_Eukaryota 433 6.44e-117   NTclustered gi|300078496|gb|GU001158.1| 5778 g161231 i0 100 50.8170212765957 234 0 99 0 1 234 2663 2896 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11942 433 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11387209 11387209 PRJNA695273_P_NODE_98349_length_281_cov_5.572115_g97591_i0 PRJNA695273 98349 281 5.572115 15.65764315 Vermamoeba 1260114 Tubulinea other_Eukaryota 492 1.2899999999999996e-134   NTclustered gi|909719645|gb|KT185625.1| 5778 g97591 i0 98.221 49.067615658363 281 5 100 0 1 281 5311 5031 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13788 492 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12155492 12155492 PRJNA695273_P_NODE_107510_length_271_cov_1.555556_g106752_i0 PRJNA695273 107510 271 1.555556 4.21555676 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 435 2.11e-117   NTclustered gi|423292048|gb|JQ519470.1| 5778 g106752 i0 95.572 81.1918819188192 271 12 100 0 1 271 81 351 Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds blastn 22003 435 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12158303 12158303 PRJNA695273_P_NODE_86090_length_298_cov_1.026667_g85332_i0 PRJNA695273 86090 298 1.026667 3.05946766 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 154 7.38e-33   NTclustered gi|909719647|gb|KT185627.1| 5778 g85332 i0 81.579 96.8422818791946 190 31 63 4 100 288 26303 26489 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 28859 154 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18528089 18528089 PRJNA695273_P_NODE_100115_length_279_cov_6.354369_g99357_i0 PRJNA695273 100115 279 6.354369 17.72868951 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 490 4.59e-134   NTclustered gi|300078496|gb|GU001158.1| 5778 g99357 i0 98.905 25.179211469534 274 3 98 0 6 279 4385 4112 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7025 490 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31599852 31599852 PRJNA695273_P_NODE_82916_length_303_cov_2.143478_g82158_i0 PRJNA695273 82916 303 2.143478 6.49473834 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 149 5.71e-44   NR ABD72565.1 5778 g82158 i0 66 0.99009900990099 100 34 99 0 303 4 35 134 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 300 149 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;