RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA695140", tax_phylum = "Nitrospirota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Nitrospirota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA695140 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3733403 3733403 PRJNA695140_S_NODE_6783_length_202_cov_2.139394_g6602_i0 PRJNA695140 6783 202 2.139394 4.32157588 Nitrospira 1234 Bacteria Bacteria 368 1.54e-97   NTclustered gi|922305621|gb|CP011801.1| 42253 g6602 i0 99.505 178.262376237624 202 1 100 0 1 202 1278207 1278408 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 36009 368 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
10880083 10880083 PRJNA695140_S_NODE_11909_length_156_cov_3.815126_g11728_i0 PRJNA695140 11909 156 3.815126 5.95159656 Nitrospira sp. KM1 1936990 Bacteria Bacteria 283 4.1899999999999994e-72   NTclustered gi|1808878785|dbj|AP022671.1| 1936990 g11728 i0 99.359 21.4551282051282 156 1 100 0 1 156 4207731 4207576 Nitrospira sp. KM1 DNA, complete genome blastn 3347 283 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. KM1
19802997 19802997 PRJNA695140_S_NODE_6856_length_201_cov_2.493902_g6675_i0 PRJNA695140 6856 201 2.493902 5.01274302 Nitrospira japonica 1325564 Bacteria Bacteria 355 1.19e-93   NTclustered gi|1167499077|emb|LT828648.1| 1325564 g6675 i0 98.507 219.691542288557 201 3 100 0 1 201 2392024 2391824 Nitrospira japonica isolate Genome sequencing of Nitrospira japonica strain NJ11 genome assembly, chromosome: I blastn 44158 355 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira japonica
24133366 24133366 PRJNA695140_S_NODE_1879_length_386_cov_4.925501_g1698_i0 PRJNA695140 1879 386 4.925501 19.01243386 Nitrospira 1234 Bacteria Bacteria 697 0   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g1698 i0 99.223 138.751295336788 386 3 100 0 1 386 2093999 2094384 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 53558 697 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;