RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA695140", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA695140 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28440793 28440793 PRJNA695140_S_NODE_6366_length_208_cov_3.994152_g6185_i0 PRJNA695140 6366 208 3.994152 8.30783616 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.1 0.00344   NR RLB60749.1 2026735 g6185 i0 50 0.634615384615385 44 22 63.5 0 149 18 175 218 RLB60749.1 MAG: hypothetical protein DRI90_12965, partial [Deltaproteobacteria bacterium] diamond 132 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32296015 32296015 PRJNA695140_S_NODE_7939_length_187_cov_3.366667_g7758_i0 PRJNA695140 7939 187 3.366667 6.29566729 Polyangiaceae bacterium 2268199 Bacteria Bacteria 44.7 0.00375   NR HSC87681.1 2268199 g7758 i0 65.4 0.417112299465241 26 9 41.7 0 87 10 366 391 HSC87681.1 S1 RNA-binding domain-containing protein [Polyangiaceae bacterium] diamond 78 44.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;