RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA695140" and tax_kingdom = "Fungi"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Fungi · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA695140 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3227080 3227080 PRJNA695140_S_NODE_4103_length_258_cov_2.687783_g3922_i0 PRJNA695140 4103 258 2.687783 6.93448014 uncultured fungus 175245 Fungi Fungi 182 2.87e-41   NTclustered gi|2159203179|emb|OU941607.1| 175245 g3922 i0 79.845 32.4496124031008 258 45 99 4 3 258 613 865 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus02900 blastn 8372 182 1 Eukaryota Opisthokonta Fungi           uncultured fungus
5779612 5779612 PRJNA695140_S_NODE_4705_length_242_cov_1.287805_g4524_i0 PRJNA695140 4705 242 1.287805 3.1164881 uncultured fungus 175245 Fungi Fungi 250 7.2e-62   NTclustered gi|2159201594|emb|OU940628.1| 175245 g4524 i0 85.772 2.02892561983471 246 24 100 8 1 242 674 912 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01921 blastn 491 250 1 Eukaryota Opisthokonta Fungi           uncultured fungus
7054687 7054687 PRJNA695140_S_NODE_2026_length_369_cov_15.246988_g1845_i0 PRJNA695140 2026 369 15.246988 56.26138572 uncultured fungus 175245 Fungi Fungi 638 2.1199999999999997e-178   NTclustered gi|2159203857|emb|OU942259.1| 175245 g1845 i0 99.153 74.5040650406504 354 3 96 0 15 368 653 1006 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus03553 blastn 27492 638 1 Eukaryota Opisthokonta Fungi           uncultured fungus
7054715 7054715 PRJNA695140_S_NODE_4346_length_251_cov_3.981308_g4165_i0 PRJNA695140 4346 251 3.981308 9.99308308 uncultured fungus 175245 Fungi Fungi 383 7.099999999999999e-102   NTclustered gi|2159204267|emb|OU942669.1| 175245 g4165 i0 94.779 91.5856573705179 249 8 99 3 1 249 1237 1480 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus03962 blastn 22988 383 1 Eukaryota Opisthokonta Fungi           uncultured fungus
7559452 7559452 PRJNA695140_S_NODE_5386_length_226_cov_3.814815_g5205_i0 PRJNA695140 5386 226 3.814815 8.6214819 Eukaryota 2759 Fungi Fungi 268 1.83e-67   NTclustered gi|511488219|gb|JX898639.1| 175245 g5205 i0 88.991 41.5884955752212 218 22 96 1 1 218 274 489 Uncultured fungus clone BME_D02-15 28S ribosomal RNA gene, partial sequence blastn 9399 270 0.992592592592593 Eukaryota Opisthokonta Fungi           uncultured fungus
9604563 9604563 PRJNA695140_S_NODE_2668_length_319_cov_25.539007_g2487_i0 PRJNA695140 2668 319 25.539007 81.46943233 uncultured fungus 175245 Fungi Fungi 200 1.0099999999999999e-46   NTclustered gi|2159200592|emb|OU939208.1| 175245 g2487 i0 87.222 54.2727272727273 180 18 56 5 141 319 721 896 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus00502 blastn 17313 200 1 Eukaryota Opisthokonta Fungi           uncultured fungus
12660915 12660915 PRJNA695140_S_NODE_13250_length_150_cov_1.380531_g13069_i0 PRJNA695140 13250 150 1.380531 2.0707965 Malassezia 55193 Fungi Fungi 63.9 5.64e-6   NTclustered gi|2105650794|gb|MW683313.1| 55194 g13069 i0 97.297 24.4133333333333 37 1 25 0 40 76 911 875 Malassezia furfur strain CBS 9365 mitochondrion, complete genome blastn 3662 63.9 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia furfur
13935513 13935513 PRJNA695140_S_NODE_3131_length_296_cov_2.189189_g2950_i0 PRJNA695140 3131 296 2.189189 6.47999944 Opisthokonta 33154 Fungi Fungi 65.8 3.53e-6   NTclustered gi|1546630317|ref|XM_027626819.1| 76775 g2950 i0 97.368 1.38513513513514 38 1 13 0 12 49 1378 1341 Malassezia restricta alpha 1,2-mannosyltransferase (MRET_0192), partial mRNA blastn 410 65.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
14705081 14705081 PRJNA695140_S_NODE_3432_length_282_cov_1.510204_g3251_i0 PRJNA695140 3432 282 1.510204 4.25877528 Vittaforma corneae 42399 Fungi Fungi 115 3.27e-21   NTclustered gi|667639983|ref|XR_552275.1| 993615 g3251 i0 79.762 3.21276595744681 168 26 58 7 38 200 1512 1348 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 906 115 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
14705137 14705137 PRJNA695140_S_NODE_9892_length_169_cov_2.356061_g9711_i0 PRJNA695140 9892 169 2.356061 3.98174309 uncultured fungus 175245 Fungi Fungi 128 2.28e-25   NTclustered gi|480554577|gb|KC558144.1| 175245 g9711 i0 80.702 1.97633136094675 171 27 100 5 1 169 192 26 Uncultured fungus clone NTS_28S_051A_1_a6 28S ribosomal RNA gene, partial sequence blastn 334 128 1 Eukaryota Opisthokonta Fungi           uncultured fungus
17253912 17253912 PRJNA695140_S_NODE_1754_length_398_cov_28.096953_g1573_i0 PRJNA695140 1754 398 28.096953 111.82587294 Neurospora crassa 5141 Fungi Fungi 56.5 0.003   NTclustered gi|18376239|emb|AL670009.1| 5141 g1573 i0 100 0.0753768844221105 30 0 8 0 14 43 68475 68504 Neurospora crassa DNA linkage group V cosmid contig 123A4 blastn 30 56.5 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Sordariales Sordariaceae Neurospora Neurospora crassa
19033364 19033364 PRJNA695140_S_NODE_8195_length_184_cov_19.823129_g8014_i0 PRJNA695140 8195 184 19.823129 36.47455736 Siepmannia 595254 Fungi Fungi 82.4 2e-11   NTclustered gi|570963359|gb|KF617961.1| 175245 g8014 i0 87.324 0.771739130434783 71 9 39 0 112 182 297 227 Uncultured fungus clone 3182H8 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 142 82.4 1 Eukaryota Opisthokonta Fungi           uncultured fungus
21583790 21583790 PRJNA695140_S_NODE_1877_length_386_cov_8.954155_g1696_i0 PRJNA695140 1877 386 8.954155 34.5630383 Opisthokonta 33154 Fungi Fungi 527 5.019999999999998e-145   NTclustered gi|2159203857|emb|OU942259.1| 175245 g1696 i0 91.237 97.2668393782383 388 32 100 1 1 386 1009 1396 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus03553 blastn 37545 527 1 Eukaryota Opisthokonta Fungi           uncultured fungus
24902366 24902366 PRJNA695140_S_NODE_11740_length_157_cov_3.383333_g11559_i0 PRJNA695140 11740 157 3.383333 5.31183281 Endoreticulatus sp. CHW-2004 Taiwan 262393 Fungi Fungi 134 4.5e-27   NTclustered gi|63095238|gb|AY960111.1| 262393 g11559 i0 97.436 8.89808917197452 78 2 50 0 67 144 285 208 Endoreticulatus sp. CHW-2004 Taiwan large subunit ribosomal RNA gene, complete sequence blastn 1397 134 1 Eukaryota Opisthokonta Fungi Microsporidia       Endoreticulatus Endoreticulatus sp. CHW-2004 Taiwan
32580581 32580581 PRJNA695140_S_NODE_4599_length_244_cov_7.024155_g4418_i0 PRJNA695140 4599 244 7.024155 17.1389382 Valsa sordida 252740 Fungi Fungi 44.3 0.0111   NR ROV94177.1 252740 g4418 i0 36.6 0.872950819672131 71 37 77.5 1 205 17 560 630 ROV94177.1 hypothetical protein VSDG_05709 [Cytospora chrysosperma] diamond 213 44.3 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Diaporthales Cytosporaceae Cytospora Cytospora chrysosperma

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;