RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA695140", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA695140 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1181546 1181546 PRJNA695140_S_NODE_10981_length_162_cov_1.352000_g10800_i0 PRJNA695140 10981 162 1.352 2.19024 Opisthokonta 33154 Chordata Chordata 60.2 8.06e-5   NTclustered gi|2118995038|ref|XR_006364185.1| 7888 g10800 i0 97.222 1.12345679012346 36 0 22 1 127 162 110 76 PREDICTED: Protopterus annectens 28S ribosomal RNA (LOC122797509), rRNA blastn 182 60.2 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
16484427 16484427 PRJNA695140_S_NODE_2553_length_327_cov_8.189655_g2372_i0 PRJNA695140 2553 327 8.189655 26.78017185 Cheloniidae 8465 Chordata Chordata 52.8 0.031   NTclustered gi|2911500576|emb|OZ223607.1| 8472 g2372 i0 100 0.256880733944954 28 0 9 0 297 324 10181252 10181279 Lepidochelys kempii isolate rLepKem1 genome assembly, chromosome: 21 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii
24902408 24902408 PRJNA695140_S_NODE_3520_length_278_cov_2.908714_g3339_i0 PRJNA695140 3520 278 2.908714 8.08622492 Spinus spinus 160760 Chordata Chordata 54.7 0.007   NTclustered gi|2917663466|emb|OZ228753.1| 160760 g3339 i0 94.444 0.258992805755396 36 1 13 1 230 264 37205157 37205122 Spinus spinus genome assembly, chromosome: 5 blastn 72 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;