RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA694770", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 4 ✖

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA694770 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12153874 12153874 PRJNA694770_P_NODE_52090_length_291_cov_1.967890_g51796_i0 PRJNA694770 52090 291 1.96789 5.7265599 Acetomicrobium mobile 97477 Bacteria Bacteria 87.9 7.39e-13   NTclustered gi|390619527|gb|CP003198.1| 891968 g51796 i0 98 17.8178694158076 50 1 17 0 1 50 523217 523266 Acetomicrobium mobile DSM 13181 chromosome, complete genome blastn 5185 87.9 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Acetomicrobiaceae Acetomicrobium Acetomicrobium mobile
30430560 30430560 PRJNA694770_P_NODE_94533_length_243_cov_1.811765_g94239_i0 PRJNA694770 94533 243 1.811765 4.40258895 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 158 4.31e-45   NR WP_299302745.1 1678694 g94239 i0 100 0.987654320987654 80 0 98.8 0 3 242 66 145 WP_299302745.1 ABC transporter substrate-binding protein [uncultured Fretibacterium sp.] diamond 240 158 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
30852141 30852141 PRJNA694770_P_NODE_80514_length_250_cov_0.870056_g80220_i0 PRJNA694770 80514 250 0.870056 2.17514 Fretibacterium 1434006 Bacteria Bacteria 170 5.259999999999999e-47   NR WP_299078920.1 1678694 g80220 i0 98.8 2.988 83 1 99.6 0 250 2 28 110 WP_299078920.1 flagellar hook-associated protein FlgK [uncultured Fretibacterium sp.] diamond 747 170 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
30872471 30872471 PRJNA694770_P_NODE_96334_length_243_cov_0.905882_g96040_i0 PRJNA694770 96334 243 0.905882 2.20129326 Synergistaceae bacterium 2053624 Bacteria Bacteria 62.4 2.37e-10   NR NLD95480.1 2053624 g96040 i0 74.3 0.851851851851852 35 9 43.2 0 105 1 57 91 NLD95480.1 hypothetical protein [Synergistaceae bacterium] diamond 207 62.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;