contig_metadata
12 rows where bioproject = "PRJNA694770", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6285261 | 6285261 | PRJNA694770_P_NODE_85085_length_248_cov_0.880000_g84791_i0 | PRJNA694770 | 85085 | 248 | 0.88 | 2.1824 | Treponema | 157 | Bacteria | Bacteria | 448 | 2.4499999999999996e-121 | NTclustered | gi|2265168914|gb|CP051304.1| | 158 | g84791 | i0 | 99.194 | 18.0282258064516 | 248 | 2 | 100 | 0 | 1 | 248 | 2679387 | 2679634 | Treponema denticola strain CD-1 chromosome, complete genome | blastn | 4471 | 448 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 7054066 | 7054066 | PRJNA694770_P_NODE_77306_length_252_cov_1.139665_g77012_i0 | PRJNA694770 | 77306 | 252 | 1.139665 | 2.8719558 | Treponema sp. OMZ 803 | 120682 | Bacteria | Bacteria | 453 | 5.36e-123 | NTclustered | gi|2265127813|gb|CP051195.1| | 120682 | g77012 | i0 | 99.206 | 12.9206349206349 | 252 | 0 | 100 | 2 | 1 | 252 | 2361026 | 2361275 | Treponema sp. OMZ 803 strain BF2M chromosome, complete genome | blastn | 3256 | 453 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 803 | ||
| 8326676 | 8326676 | PRJNA694770_P_NODE_100627_length_240_cov_2.305389_g100333_i0 | PRJNA694770 | 100627 | 240 | 2.305389 | 5.5329336 | Leptospira sp. severe_002 | 2838237 | Bacteria | Bacteria | 161 | 3.4399999999999996e-35 | NTclustered | gi|2120242214|gb|CP075692.1| | 2838237 | g100333 | i0 | 81.818 | 1.59583333333333 | 198 | 30 | 81 | 6 | 19 | 213 | 217649 | 217455 | Leptospira sp. severe_002 chromosome 1 | blastn | 383 | 161 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira sp. severe_002 | ||
| 8834322 | 8834322 | PRJNA694770_P_NODE_92727_length_244_cov_1.356725_g92433_i0 | PRJNA694770 | 92727 | 244 | 1.356725 | 3.310409 | Treponema | 157 | Bacteria | Bacteria | 363 | 8.949999999999999e-96 | NTclustered | gi|719625061|gb|CP009227.1| | 1539298 | g92433 | i0 | 93.776 | 9.93852459016393 | 241 | 15 | 99 | 0 | 1 | 241 | 1530932 | 1531172 | Treponema sp. OMZ 838, complete genome | blastn | 2425 | 363 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 838 | ||
| 9603249 | 9603249 | PRJNA694770_P_NODE_54468_length_287_cov_2.990654_g54174_i0 | PRJNA694770 | 54468 | 287 | 2.990654 | 8.58317698 | Treponema sp. OMZ 305 | 1659192 | Bacteria | Bacteria | 296 | 1.11e-75 | NTclustered | gi|2265133351|gb|CP051300.1| | 1659192 | g54174 | i0 | 85.315 | 0.996515679442509 | 286 | 42 | 99 | 0 | 2 | 287 | 1497369 | 1497654 | Treponema sp. OMZ 305 chromosome, complete genome | blastn | 286 | 296 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 305 | ||
| 13429647 | 13429647 | PRJNA694770_P_NODE_93991_length_244_cov_0.900585_g93697_i0 | PRJNA694770 | 93991 | 244 | 0.900585 | 2.1974274 | Treponema socranskii | 53419 | Bacteria | Bacteria | 311 | 3.29e-80 | NTclustered | gi|2265187740|gb|CP054258.1| | 69713 | g93697 | i0 | 89.712 | 1.99180327868852 | 243 | 25 | 99 | 0 | 1 | 243 | 1622896 | 1622654 | Treponema socranskii subsp. buccale strain ATCC 35534 chromosome, complete genome | blastn | 486 | 311 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema socranskii | ||
| 15978199 | 15978199 | PRJNA694770_P_NODE_79033_length_251_cov_0.865169_g78739_i0 | PRJNA694770 | 79033 | 251 | 0.865169 | 2.17157419 | Candidatus Gallitreponema excrementavium | 2840840 | Bacteria | Bacteria | 162 | 1.73e-46 | NR | MBO8457604.1 | 2840840 | g78739 | i0 | 100 | 0.99203187250996006 | 83 | 0 | 99.2 | 0 | 250 | 2 | 174 | 256 | MBO8457604.1 cell division protein FtsZ [Candidatus Gallitreponema excrementavium] | diamond | 249 | 162 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Candidatus Gallitreponema | Candidatus Gallitreponema excrementavium | |||
| 17758913 | 17758913 | PRJNA694770_P_NODE_73574_length_258_cov_1.416216_g73280_i0 | PRJNA694770 | 73574 | 258 | 1.416216 | 3.65383728 | Treponema | 157 | Bacteria | Bacteria | 411 | 3.36e-110 | NTclustered | gi|719625061|gb|CP009227.1| | 1539298 | g73280 | i0 | 95.686 | 6.95348837209302 | 255 | 11 | 99 | 0 | 1 | 255 | 173275 | 173529 | Treponema sp. OMZ 838, complete genome | blastn | 1794 | 414 | 0.992753623188406 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 838 | ||
| 24132895 | 24132895 | PRJNA694770_P_NODE_70879_length_262_cov_2.317460_g70585_i0 | PRJNA694770 | 70879 | 262 | 2.31746 | 6.0717452 | Treponema | 157 | Bacteria | Bacteria | 368 | 2.09e-97 | NTclustered | gi|2034589463|gb|CP050497.1| | 69710 | g70585 | i0 | 91.985 | 2 | 262 | 21 | 100 | 0 | 1 | 262 | 1012803 | 1012542 | Treponema vincentii strain OMZ 806 chromosome, complete genome | blastn | 524 | 368 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 27998776 | 27998776 | PRJNA694770_P_NODE_65065_length_272_cov_1.170854_g64771_i0 | PRJNA694770 | 65065 | 272 | 1.170854 | 3.18472288 | Leptospira kmetyi | 408139 | Bacteria | Bacteria | 114 | 2.87e-28 | NR | WP_010572207.1 | 408139 | g64771 | i0 | 63.4 | 5.45955882352941 | 82 | 30 | 90.4 | 0 | 1 | 246 | 258 | 339 | WP_010572207.1 uroporphyrinogen decarboxylase family protein [Leptospira kmetyi] | diamond | 1485 | 114 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira kmetyi | ||
| 30777749 | 30777749 | PRJNA694770_P_NODE_100094_length_241_cov_0.916667_g99800_i0 | PRJNA694770 | 100094 | 241 | 0.916667 | 2.20916747 | Candidatus Ornithospirochaeta stercorigallinarum | 2840898 | Bacteria | Bacteria | 79.7 | 1.64e-15 | NR | HIS13673.1 | 2840898 | g99800 | i0 | 100 | 7.65560165975104 | 41 | 0 | 51 | 0 | 123 | 1 | 1 | 41 | HIS13673.1 WYL domain-containing transcriptional regulator [Candidatus Ornithospirochaeta stercorigallinarum] | diamond | 1845 | 79.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Candidatus Ornithospirochaeta | Candidatus Ornithospirochaeta stercorigallinarum | ||
| 32800591 | 32800591 | PRJNA694770_P_NODE_90900_length_245_cov_0.895349_g90606_i0 | PRJNA694770 | 90900 | 245 | 0.895349 | 2.19360505 | Sphaerochaetaceae bacterium | 2791017 | Bacteria | Bacteria | 60.8 | 1.62e-9 | NR | MFA7188517.1 | 2791017 | g90606 | i0 | 59.2 | 2.4 | 49 | 20 | 60 | 0 | 2 | 148 | 80 | 128 | MFA7188517.1 hypothetical protein [Sphaerochaetaceae bacterium] | diamond | 588 | 60.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaetaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;