RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA694770" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 9 ✖

bioproject 1

  • PRJNA694770 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
674817 674817 PRJNA694770_P_NODE_55581_length_286_cov_1.427230_g55287_i0 PRJNA694770 55581 286 1.42723 4.0818778 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 507 4.69e-139   NTclustered gi|922689899|gb|CP012410.1| 712357 g55287 i0 98.606 1.0034965034965 287 3 100 1 1 286 2046896 2046610 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 287 507 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
4501604 4501604 PRJNA694770_P_NODE_101124_length_233_cov_2.781250_g100830_i0 PRJNA694770 101124 233 2.78125 6.4803125 Sneathia vaginalis 187101 Bacteria Bacteria 431 2.2899999999999996e-116   NTclustered gi|808076794|gb|CP011280.1| 187101 g100830 i0 100 3 233 0 100 0 1 233 295170 295402 Sneathia vaginalis strain SN35 chromosome, complete genome blastn 699 431 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia vaginalis
5009038 5009038 PRJNA694770_P_NODE_54044_length_288_cov_1.432558_g53750_i0 PRJNA694770 54044 288 1.432558 4.12576704 Fusobacterium 848 Bacteria Bacteria 532 7.8e-147   NTclustered gi|2573686249|gb|CP133474.1| 851 g53750 i0 100 100 288 0 100 0 1 288 1478800 1478513 Fusobacterium nucleatum strain LMG 13131 chromosome, complete genome blastn 28800 532 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
13428352 13428352 PRJNA694770_P_NODE_47551_length_304_cov_1.095238_g47257_i0 PRJNA694770 47551 304 1.095238 3.32952352 Leptotrichia buccalis 40542 Bacteria Bacteria 54.7 0.008   NTclustered gi|257048753|gb|CP001685.1| 523794 g47257 i0 100 0.0953947368421053 29 0 10 0 237 265 70770 70798 Leptotrichia buccalis DSM 1135, complete genome blastn 29 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
17253809 17253809 PRJNA694770_P_NODE_97434_length_242_cov_0.911243_g97140_i0 PRJNA694770 97434 242 0.911243 2.20520806 Leptotrichia alba 3239304 Bacteria Bacteria 182 2.66e-41   NTclustered gi|2785244533|gb|CP165647.1| 3239304 g97140 i0 91.045 0.958677685950413 134 12 55 0 1 134 352084 352217 Leptotrichia sp. HSP-536 chromosome, complete genome blastn 232 182 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia alba
21078202 21078202 PRJNA694770_P_NODE_90297_length_245_cov_1.790698_g90003_i0 PRJNA694770 90297 245 1.790698 4.3872101 Sneathia vaginalis 187101 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|808076794|gb|CP011280.1| 187101 g90003 i0 100 458.032653061224 245 0 100 0 1 245 210018 210262 Sneathia vaginalis strain SN35 chromosome, complete genome blastn 112218 453 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia vaginalis
21583629 21583629 PRJNA694770_P_NODE_91957_length_245_cov_0.895349_g91663_i0 PRJNA694770 91957 245 0.895349 2.19360505 Fusobacterium 848 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|2706501641|gb|CP084157.1| 76857 g91663 i0 100 48.3551020408163 245 0 100 0 1 245 598256 598500 Fusobacterium polymorphum strain KCOM2446 chromosome, complete genome blastn 11847 453 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
28293934 28293934 PRJNA694770_P_NODE_87026_length_247_cov_0.885057_g86732_i0 PRJNA694770 87026 247 0.885057 2.18609079 Bacteria 2 Bacteria Bacteria 93.2 6.44e-20   NR WP_129491600.1 859 g86732 i0 100 6.14574898785425 46 0 55.9 0 245 108 528 573 WP_129491600.1 site-specific DNA-methyltransferase [Fusobacterium necrophorum] diamond 1518 93.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
31599777 31599777 PRJNA694770_P_NODE_67576_length_268_cov_1.256410_g67282_i0 PRJNA694770 67576 268 1.25641 3.3671788 Fusobacterium polymorphum 76857 Bacteria Bacteria 136 2.73e-39   NR WP_335972170.1 76857 g67282 i0 80.7 0.92910447761194 83 16 92.9 0 249 1 1 83 WP_335972170.1 hypothetical protein, partial [Fusobacterium polymorphum] diamond 249 136 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;