RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA694770", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA694770 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28946087 28946087 PRJNA694770_P_NODE_97888_length_242_cov_0.911243_g97594_i0 PRJNA694770 97888 242 0.911243 2.20520806 Victivallaceae bacterium 2793042 Bacteria Bacteria 42.4 0.0499   NR MCQ2378255.1 2793042 g97594 i0 78.3 0.285123966942149 23 5 28.5 0 174 106 335 357 MCQ2378255.1 glutamine synthetase III [Victivallaceae bacterium] diamond 69 42.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
31504899 31504899 PRJNA694770_P_NODE_67076_length_269_cov_0.928571_g66782_i0 PRJNA694770 67076 269 0.928571 2.49785599 Lentisphaerota bacterium 1932692 Bacteria Bacteria 121 2.24e-32   NR NMA45367.1 1932692 g66782 i0 98.3 0.669144981412639 60 1 66.9 0 1 180 135 194 NMA45367.1 radical SAM protein [Lentisphaerota bacterium] diamond 180 121 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;