RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA694770", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 7 ✖

bioproject 1

  • PRJNA694770 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5777693 5777693 PRJNA694770_P_NODE_32145_length_354_cov_1.743772_g31851_i0 PRJNA694770 32145 354 1.743772 6.17295288 Caenorhabditis elegans 6239 Nematoda Nematoda 649 0   NTclustered gi|687866195|emb|LK928028.1| 6239 g31851 i0 99.718 2.31073446327684 354 1 100 0 1 354 52384 52031 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000420 blastn 818 649 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19802726 19802726 PRJNA694770_P_NODE_94376_length_244_cov_0.883041_g94082_i0 PRJNA694770 94376 244 0.883041 2.15462004 Strongyloides ratti 34506 Nematoda Nematoda 56.5 0.002   NTclustered gi|1376155315|ref|XM_024653585.1| 34506 g94082 i0 100 0.122950819672131 30 0 12 0 103 132 2660 2631 Strongyloides ratti 85/88 kDa calcium-independent phospholipase A2 (SRAE_X000184700), partial mRNA blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
21076707 21076707 PRJNA694770_P_NODE_34777_length_344_cov_1.623616_g34483_i0 PRJNA694770 34777 344 1.623616 5.58523904 Caenorhabditis elegans 6239 Nematoda Nematoda 636 7.059999999999998e-178   NTclustered gi|1429284|emb|Z75954.1| 6239 g34483 i0 100 2.96220930232558 344 0 100 0 1 344 1054 1397 Caenorhabditis elegans Cosmid F58H1, complete sequence blastn 1019 636 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24900890 24900890 PRJNA694770_P_NODE_46960_length_305_cov_2.491379_g46666_i0 PRJNA694770 46960 305 2.491379 7.59870595 Caenorhabditis elegans 6239 Nematoda Nematoda 551 2.2999999999999993e-152   NTclustered gi|1429284|emb|Z75954.1| 6239 g46666 i0 100 2.47213114754098 298 0 98 0 8 305 2230 1933 Caenorhabditis elegans Cosmid F58H1, complete sequence blastn 754 551 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
29893228 29893228 PRJNA694770_P_NODE_11531_length_550_cov_1.125786_g11239_i0 PRJNA694770 11531 550 1.125786 6.191823 Ostertagia ostertagi 6317 Nematoda Nematoda 359 7.009999999999997e-119   NR KAK6021057.1 6317 g11239 i0 99.5 0.998181818181818 183 1 99.8 0 2 550 35 217 KAK6021057.1 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ostertagia ostertagi] diamond 549 359 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
30399080 30399080 PRJNA694770_P_NODE_93273_length_244_cov_0.900585_g92979_i0 PRJNA694770 93273 244 0.900585 2.1974274 Auanema sp. JU1783 2878363 Nematoda Nematoda 75.1 1.5700000000000001e-13   NR CAI4220994.1 2878363 g92979 i0 45.3 0.922131147540984 75 41 92.2 0 226 2 1378 1452 CAI4220994.1 unnamed protein product [Auanema sp. JU1783] diamond 225 75.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
30630864 30630864 PRJNA694770_P_NODE_68133_length_267_cov_1.484536_g67839_i0 PRJNA694770 68133 267 1.484536 3.96371112 Metazoa 33208 Nematoda Nematoda 52.4 1.94e-5   NR KAE9417004.1 6313 g67839 i0 84.6 2.92134831460674 26 4 29.2 0 228 151 1 26 KAE9417004.1 hypothetical protein Angca_004366 [Angiostrongylus cantonensis] diamond 780 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;