RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA694770", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Peregrinibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 6 ✖

tax_clade 1

  • Bacteria candidate phyla · 6 ✖

bioproject 1

  • PRJNA694770 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8329006 8329006 PRJNA694770_P_NODE_93607_length_244_cov_0.900585_g93313_i0 PRJNA694770 93607 244 0.900585 2.1974274 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 135 7.99e-36   NR MBI2453223.1 2030811 g93313 i0 77.8 4.97950819672131 81 18 99.6 0 244 2 276 356 MBI2453223.1 adenylosuccinate lyase [Candidatus Peregrinibacteria bacterium] diamond 1215 135 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
23628500 23628500 PRJNA694770_P_NODE_90999_length_245_cov_0.895349_g90705_i0 PRJNA694770 90999 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 139 3.14e-37   NR MFH0820624.1 2030811 g90705 i0 76.5 8.9265306122449 81 19 99.2 0 2 244 260 340 MFH0820624.1 serine--tRNA ligase [Candidatus Peregrinibacteria bacterium] diamond 2187 139 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
27114049 27114049 PRJNA694770_P_NODE_95722_length_243_cov_0.905882_g95428_i0 PRJNA694770 95722 243 0.905882 2.20129326 Candidatus Peribacteraceae bacterium 2735830 Bacteria Bacteria 92 1.69e-19   NR HVW66767.1 2735830 g95428 i0 53.2 2.90123456790123 79 37 97.5 0 237 1 89 167 HVW66767.1 hypothetical protein [Candidatus Peribacteraceae bacterium] diamond 705 92 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales     Candidatus Peribacteraceae bacterium
28041528 28041528 PRJNA694770_P_NODE_50585_length_295_cov_1.734234_g50291_i0 PRJNA694770 50585 295 1.734234 5.1159903 Bacteria 2 Bacteria Bacteria 104 1.56e-25   NR MBN2087122.1 2030811 g50291 i0 51 2.94915254237288 96 47 97.6 0 5 292 114 209 MBN2087122.1 ribulose-phosphate 3-epimerase [Candidatus Peregrinibacteria bacterium] diamond 870 104 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
28598621 28598621 PRJNA694770_P_NODE_31587_length_357_cov_0.750000_g31293_i0 PRJNA694770 31587 357 0.75 2.6775 Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_ 2030811 Bacteria Bacteria 178 4.75e-54   NR OGJ45670.1 1801900 g31293 i0 75.6 1 119 29 100 0 1 357 5 123 OGJ45670.1 MAG: hypothetical protein A3J23_01810 [Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_02_FULL_48_14] diamond 357 178 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_02_FULL_48_14
29893267 29893267 PRJNA694770_P_NODE_86891_length_247_cov_0.885057_g86597_i0 PRJNA694770 86891 247 0.885057 2.18609079 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 132 1.57e-33   NR MBD3360537.1 2030811 g86597 i0 75.6 35.8178137651822 82 20 99.6 0 2 247 577 658 MBD3360537.1 type IV secretion system DNA-binding domain-containing protein [Candidatus Peregrinibacteria bacterium] diamond 8847 132 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;