RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA694557" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA694557 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7051854 7051854 PRJNA694557_P_NODE_16006_length_322_cov_3.722892_g15786_i0 PRJNA694557 16006 322 3.722892 11.98771224 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 568 2.4299999999999993e-157   NTclustered gi|166048041|emb|CU364162.1| 100861 g15786 i0 98.447 97.8291925465839 322 5 100 0 1 322 346 667 Aphanomyces euteiches cDNA blastn 31501 568 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
7051996 7051996 PRJNA694557_P_NODE_24326_length_247_cov_0.971264_g24106_i0 PRJNA694557 24326 247 0.971264 2.39902208 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 398 2.4899999999999996e-106   NTclustered gi|698793876|ref|XR_717098.1| 112090 g24106 i0 98.246 92.2226720647773 228 2 91 1 1 226 2317 2090 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 22779 398 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
19800445 19800445 PRJNA694557_P_NODE_9616_length_442_cov_3.663957_g9396_i0 PRJNA694557 9616 442 3.663957 16.19468994 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 399 1.33e-106   NTclustered gi|166034714|emb|CU356751.1| 100861 g9396 i0 84.864 21.7714932126697 403 53 90 7 25 421 506 906 Aphanomyces euteiches cDNA blastn 9623 399 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;