RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA694557" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA694557 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4501455 4501455 PRJNA694557_P_NODE_3424_length_832_cov_6.015810_g3224_i0 PRJNA694557 3424 832 6.01581 50.0515392 Chytridiales sp. 2011832 Fungi Fungi 359 4.4e-94   NTclustered gi|2468791101|gb|OQ702943.1| 2011832 g3224 i0 78.01 39.3990384615385 623 102 74 22 214 830 4441 3848 Chytridiales sp. isolate PSC290 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 32780 359 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales     Chytridiales sp.
10108397 10108397 PRJNA694557_P_NODE_4248_length_735_cov_6.333837_g4037_i0 PRJNA694557 4248 735 6.333837 46.55370195 Entophlyctis 64501 Fungi Fungi 137 1.9800000000000003e-27   NTclustered gi|1866582500|gb|MT730675.1| 109932 g4037 i0 86.154 16.4571428571429 130 15 18 3 232 360 5091 4964 Entophlyctis luteolus isolate JEL0129 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12096 137 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis luteolus
28325486 28325486 PRJNA694557_P_NODE_11126_length_404_cov_2.326284_g10906_i0 PRJNA694557 11126 404 2.326284 9.39818736 Geranomyces 1126249 Fungi Fungi 156 4.33e-45   NR KAJ3179299.1 109894 g10906 i0 62.8 1.91584158415842 129 47 95 1 2 385 72 200 KAJ3179299.1 hypothetical protein HDU87_002908 [Geranomyces variabilis] diamond 774 157 0.993630573248408 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
28452073 28452073 PRJNA694557_P_NODE_5126_length_656_cov_2.869640_g4909_i0 PRJNA694557 5126 656 2.86964 18.8248384 Eukaryota 2759 Fungi Fungi 93.6 3.46e-18   NR KAH9261446.1 1357716 g4909 i0 73 0.576219512195122 63 17 28.8 0 272 84 115 177 KAH9261446.1 hypothetical protein BASA81_000090 [Batrachochytrium salamandrivorans] diamond 378 93.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;