RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA694557" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA694557 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16482622 16482622 PRJNA694557_P_NODE_8053_length_494_cov_2.242280_g7833_i0 PRJNA694557 8053 494 2.24228 11.0768632 Deinococcus 1298 Bacteria Bacteria 872 0   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g7833 i0 99.582 189.692307692308 478 2 97 0 1 478 1455000 1455477 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 93708 872 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
21581874 21581874 PRJNA694557_P_NODE_27137_length_211_cov_4.311594_g26917_i0 PRJNA694557 27137 211 4.311594 9.09746334 Truepera 332248 Bacteria Bacteria 274 3.6299999999999997e-69   NTclustered gi|2573973991|gb|CP133611.1| 332249 g26917 i0 92.632 503.379146919431 190 14 90 0 1 190 762060 762249 Truepera radiovictrix strain CIP 108686 chromosome, complete genome blastn 106213 274 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
29040717 29040717 PRJNA694557_P_NODE_15188_length_332_cov_6.455598_g14968_i0 PRJNA694557 15188 332 6.455598 21.43258536 Deinococcus xinjiangensis 457454 Bacteria Bacteria 126 3.1e-31   NR WP_353542351.1 457454 g14968 i0 84 0.677710843373494 75 12 67.8 0 86 310 1 75 WP_353542351.1 alkaline phosphatase [Deinococcus xinjiangensis] diamond 225 126 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
31536524 31536524 PRJNA694557_P_NODE_12356_length_378_cov_1.498361_g12136_i0 PRJNA694557 12356 378 1.498361 5.66380458 Deinococcus taklimakanensis 536443 Bacteria Bacteria 194 6.49e-58   NR WP_386846949.1 536443 g12136 i0 98 0.80952380952381 102 2 81 0 25 330 307 408 WP_386846949.1 hypothetical protein [Deinococcus taklimakanensis] diamond 306 194 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taklimakanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;