RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA694557", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA694557 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3224430 3224430 PRJNA694557_P_NODE_4543_length_707_cov_2.684543_g4331_i0 PRJNA694557 4543 707 2.684543 18.97971901 Lentivirus humimdef1 3418650 Viruses Viruses 56.5 0.005   NTclustered gi|85663540|emb|AJ877875.1| 11676 g4331 i0 100 0.0424328147100424 30 0 4 0 316 345 415 444 Human immunodeficiency virus type 1 subtype H proviral partial gp120 gene for envelope glycoprotein gp120, isolate 97DC.KP93 1997 blastn 30 56.5 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
29450678 29450678 PRJNA694557_P_NODE_26050_length_239_cov_2.716867_g25830_i0 PRJNA694557 26050 239 2.716867 6.49331213 Human immunodeficiency virus 1 11676 Viruses Viruses 44.7 0.00748   NR ADA84589.1 11676 g25830 i0 39.1 1.73221757322176 69 35 86.6 2 233 27 147 208 ADA84589.1 envelope glycoprotein, partial [Human immunodeficiency virus 1] diamond 414 44.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;