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contig_metadata

5 rows where bioproject = "PRJNA694557", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA694557 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
673379 673379 PRJNA694557_P_NODE_22801_length_255_cov_3.362637_g22581_i0 PRJNA694557 22801 255 3.362637 8.57472435 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g22581 i0 100 0.223529411764706 29 0 11 0 227 255 37 9 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
3224133 3224133 PRJNA694557_P_NODE_13323_length_360_cov_6.759582_g13103_i0 PRJNA694557 13323 360 6.759582 24.3344952 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 632 9.58e-177   NTclustered gi|512134943|gb|JX178902.1| 1295638 g13103 i0 99.145 96.2194444444444 351 3 98 0 1 351 1337 987 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 34639 632 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
7557315 7557315 PRJNA694557_P_NODE_12386_length_377_cov_3.026316_g12166_i0 PRJNA694557 12386 377 3.026316 11.40921132 Leptopharynx 502089 SAR_Eukaryotes SAR_Eukaryotes 592 1.71e-164   NTclustered gi|2006880679|emb|HG995635.1| 187299 g12166 i0 96.893 94.1724137931034 354 10 94 1 25 377 472 825 uncultured ciliate genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, clone 2f5efc6c blastn 35503 593 0.998313659359191 Eukaryota Sar   Ciliophora         uncultured ciliate
9601657 9601657 PRJNA694557_P_NODE_14688_length_339_cov_6.187970_g14468_i0 PRJNA694557 14688 339 6.18797 20.9772183 Remanella sp. 1 BS-2022 2930476 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.032   NTclustered gi|2261269021|emb|OX095846.1| 2930476 g14468 i0 100 0.0825958702064897 28 0 8 0 1 28 14 41 Remanella sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863273, clone N44:18S_rRNA::TRINITY_DN644_c0_g1_i12:99-1693(+) blastn 28 52.8 1 Eukaryota Sar   Ciliophora Karyorelictea Loxodida Loxodidae Remanella Remanella sp. 1 BS-2022
17251298 17251298 PRJNA694557_P_NODE_24834_length_245_cov_0.895349_g24614_i0 PRJNA694557 24834 245 0.895349 2.19360505 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 122 1.66e-23   NTclustered gi|2651357788|gb|PP174303.1| 41631 g24614 i0 77.083 32.6775510204082 240 38 93 17 1 229 4037 3804 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8006 122 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;