RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA694557", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 8 ✖

bioproject 1

  • PRJNA694557 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9601622 9601622 PRJNA694557_P_NODE_11888_length_388_cov_1.466667_g11668_i0 PRJNA694557 11888 388 1.466667 5.69066796 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 363 1.51e-95   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g11668 i0 84.658 95.6030927835052 365 55 94 1 23 386 69994 69630 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 37094 363 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
13427234 13427234 PRJNA694557_P_NODE_5991_length_597_cov_2.967557_g5772_i0 PRJNA694557 5991 597 2.967557 17.71631529 Gemmatirosa sp. 2510638 Bacteria Bacteria 226 2.65e-70   NR HZF66666.1 2510638 g5772 i0 69.6 1.5929648241206 161 49 80.9 0 106 588 2 162 HZF66666.1 c-type cytochrome [Gemmatirosa sp.] diamond 951 226 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
22350523 22350523 PRJNA694557_P_NODE_12278_length_379_cov_6.803922_g12058_i0 PRJNA694557 12278 379 6.803922 25.78686438 Gemmatimonadaceae 219687 Bacteria Bacteria 178 4.089999999999999e-52   NR HEY0777393.1 2510638 g12058 i0 86.7 2.29551451187335 98 13 77.6 0 74 367 1 98 HEY0777393.1 glucose-1-phosphate adenylyltransferase family protein [Gemmatirosa sp.] diamond 870 179 0.994413407821229 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
26892957 26892957 PRJNA694557_P_NODE_15141_length_333_cov_2.450000_g14921_i0 PRJNA694557 15141 333 2.45 8.1585 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 85.5 9.27e-17   NR MBI3791210.1 2026742 g14921 i0 64.5 1.67567567567568 62 22 55.9 0 188 3 4 65 MBI3791210.1 serine/threonine protein kinase [Gemmatimonadota bacterium] diamond 558 85.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27114005 27114005 PRJNA694557_P_NODE_13582_length_356_cov_4.240283_g13362_i0 PRJNA694557 13582 356 4.240283 15.09540748 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 75.9 1.73e-13   NR MBL8959171.1 2026742 g13362 i0 42.9 1.87921348314607 112 62 93.5 2 22 354 59 169 MBL8959171.1 class I SAM-dependent RNA methyltransferase [Gemmatimonadota bacterium] diamond 669 75.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27114006 27114006 PRJNA694557_P_NODE_15082_length_334_cov_2.360153_g14862_i0 PRJNA694557 15082 334 2.360153 7.88291102 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 143 6.44e-37   NR MBL8988323.1 2026742 g14862 i0 100 0.62874251497006 70 0 62.9 0 211 2 1 70 MBL8988323.1 4Fe-4S dicluster domain-containing protein [Gemmatimonadota bacterium] diamond 210 143 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30872428 30872428 PRJNA694557_P_NODE_21774_length_264_cov_1.382199_g21554_i0 PRJNA694557 21774 264 1.382199 3.64900536 Gemmatirosa sp. 2510638 Bacteria Bacteria 93.6 4.54e-20   NR HZF66908.1 2510638 g21554 i0 82.5 0.647727272727273 57 10 64.8 0 173 3 27 83 HZF66908.1 ATP-binding protein [Gemmatirosa sp.] diamond 171 93.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
32390549 32390549 PRJNA694557_P_NODE_21639_length_265_cov_1.604167_g21419_i0 PRJNA694557 21639 265 1.604167 4.25104255 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 74.7 3.95e-14   NR GJG86300.1 2839016 g21419 i0 50 1.91320754716981 88 42 97.4 1 8 265 17 104 GJG86300.1 hypothetical protein tb265_14810 [Gemmatimonadetes bacterium T265] diamond 507 74.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;