RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA694557", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA694557 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15976059 15976059 PRJNA694557_P_NODE_20473_length_275_cov_1.990099_g20253_i0 PRJNA694557 20473 275 1.990099 5.47277225 Paramoeba perurans 437603 Discosea other_Eukaryota 366 7.95e-97   NTclustered gi|145386783|gb|EF216908.1| 437603 g20253 i0 92.664 94.6618181818182 259 11 92 5 23 275 1197 1453 Neoparamoeba perurans strain GD-D1/3 28S large subunit ribosomal RNA gene, partial sequence blastn 26032 366 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
29009302 29009302 PRJNA694557_P_NODE_11088_length_405_cov_1.858434_g10868_i0 PRJNA694557 11088 405 1.858434 7.5266577 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 80.5 1.47e-14   NR XP_004335120.1 1257118 g10868 i0 54.3 0.6 81 20 60 2 6 248 604 667 XP_004335120.1 phospholipidtranslocating P-type ATPase [Acanthamoeba castellanii str. Neff] diamond 243 80.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31599742 31599742 PRJNA694557_P_NODE_7996_length_496_cov_4.718676_g7776_i0 PRJNA694557 7996 496 4.718676 23.40463296 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.9 3.19e-11   NR XP_004367727.1 1257118 g7776 i0 37.5 1.65120967741935 160 63 96.8 3 492 13 145 267 XP_004367727.1 Autophagy-related protein 27 protein [Acanthamoeba castellanii str. Neff] diamond 819 70.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;