RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA692200" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA692200 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13933262 13933262 PRJNA692200_S_NODE_4951_length_290_cov_2.771784_g4894_i0 PRJNA692200 4951 290 2.771784 8.0381736 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 99 2.5000000000000002e-22   NR XP_002787417.1 423536 g4894 i0 86.8 2.20344827586207 53 7 54.8 0 284 126 285 337 XP_002787417.1 glyceraldehyde-3-phosphate dehydrogenase, putative [Perkinsus marinus ATCC 50983] diamond 639 99 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
28913953 28913953 PRJNA692200_S_NODE_3528_length_324_cov_2.592727_g3471_i0 PRJNA692200 3528 324 2.592727 8.40043548 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 70.5 2.26e-13   NR XP_002773395.1 423536 g3471 i0 49.2 2.43518518518519 65 33 60.2 0 317 123 19 83 XP_002773395.1 Small nuclear ribonucleoprotein G, putative [Perkinsus marinus ATCC 50983] diamond 789 70.5 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
31062301 31062301 PRJNA692200_S_NODE_9935_length_224_cov_3.125714_g9878_i0 PRJNA692200 9935 224 3.125714 7.00159936 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 51.2 3.02e-5   NR KAF4655063.1 32597 g9878 i0 32.4 1.82142857142857 71 48 95.1 0 214 2 446 516 KAF4655063.1 hypothetical protein FOL46_008401 [Perkinsus olseni] diamond 408 51.2 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;