RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA692200" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA692200 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30682698 30682698 PRJNA692200_S_NODE_19133_length_169_cov_1.725000_g19076_i0 PRJNA692200 19133 169 1.725 2.91525 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 41.6 0.0332   NR MBI4539274.1 2026742 g19076 i0 46.3 0.727810650887574 41 21 71 1 129 10 62 102 MBI4539274.1 adenylate kinase [Gemmatimonadota bacterium] diamond 123 41.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31441362 31441362 PRJNA692200_S_NODE_16756_length_179_cov_1.938462_g16699_i0 PRJNA692200 16756 179 1.938462 3.46984698 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 48.5 1.18e-4   NR MBX6331852.1 2026741 g16699 i0 52.3 1.6927374301676 44 19 73.7 1 179 48 181 222 MBX6331852.1 aquaporin [Gemmatimonadaceae bacterium] diamond 303 48.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;