RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA692200" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 13 ✖

tax_kingdom 1

bioproject 1

  • PRJNA692200 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1179261 1179261 PRJNA692200_S_NODE_20521_length_165_cov_4.336207_g20464_i0 PRJNA692200 20521 165 4.336207 7.15474155 Corynebacterium 1716 Bacteria Bacteria 287 3.47e-73   NTclustered gi|2547420364|gb|CP073093.1| 38304 g20464 i0 98.758 356.175757575758 161 2 98 0 1 161 760146 759986 Corynebacterium tuberculostearicum strain CTNIH12 chromosome, complete genome blastn 58769 287 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum
5776342 5776342 PRJNA692200_S_NODE_3085_length_337_cov_5.892361_g3028_i0 PRJNA692200 3085 337 5.892361 19.85725657 Streptomyces sp. NBC_00857 2975851 Bacteria Bacteria 54.7 0.009   NTclustered gi|2655540414|gb|CP108829.1| 2975851 g3028 i0 100 0.086053412462908 29 0 9 0 253 281 2448791 2448819 Streptomyces sp. NBC_00857 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NBC_00857
9601140 9601140 PRJNA692200_S_NODE_17668_length_175_cov_1.357143_g17611_i0 PRJNA692200 17668 175 1.357143 2.37500025 Dactylosporangium thailandense 47849 Bacteria Bacteria 52.8 0.015   NTclustered gi|2666977426|dbj|AP029195.1| 47849 g17611 i0 100 0.16 28 0 16 0 137 164 7382693 7382720 Dactylosporangium thailandense JCM 3084 DNA, complete genome blastn 28 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Dactylosporangium Dactylosporangium thailandense
14701682 14701682 PRJNA692200_S_NODE_17852_length_174_cov_1.928000_g17795_i0 PRJNA692200 17852 174 1.928 3.35472 Embleya sp. NBC_00888 2975960 Bacteria Bacteria 52.8 0.015   NTclustered gi|2655411662|gb|CP108785.1| 2975960 g17795 i0 100 0.160919540229885 28 0 16 0 98 125 2988534 2988561 Embleya sp. NBC_00888 plasmid unnamed1, complete sequence blastn 28 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Embleya Embleya sp. NBC_00888
17757084 17757084 PRJNA692200_S_NODE_12674_length_202_cov_0.993464_g12617_i0 PRJNA692200 12674 202 0.993464 2.00679728 Streptomyces 1883 Bacteria Bacteria 52.8 0.018   NTclustered gi|1751485547|gb|CP023693.1| 67260 g12617 i0 100 0.415841584158416 28 0 14 0 95 122 3959630 3959603 Streptomyces cinereoruber strain ATCC 19740 chromosome, complete genome blastn 84 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cinereoruber
25405718 25405718 PRJNA692200_S_NODE_18420_length_172_cov_1.097561_g18363_i0 PRJNA692200 18420 172 1.097561 1.88780492 Corynebacterium 1716 Bacteria Bacteria 309 7.75e-80   NTclustered gi|1403572617|emb|LS483460.1| 38301 g18363 i0 99.412 360.877906976744 170 1 99 0 1 170 145169 145000 Corynebacterium minutissimum strain NCTC10288 genome assembly, chromosome: 1 blastn 62071 309 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium minutissimum
27978266 27978266 PRJNA692200_S_NODE_10165_length_222_cov_1.716763_g10108_i0 PRJNA692200 10165 222 1.716763 3.81121386 Mycobacteriales 85007 Bacteria Bacteria 43.9 0.00393   NR WP_325613105.1 1785 g10108 i0 43.9 1.40540540540541 41 23 55.4 0 68 190 87 127 WP_325613105.1 hypothetical protein [Mycobacterium sp.] diamond 312 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp.
28598596 28598596 PRJNA692200_S_NODE_13587_length_196_cov_1.632653_g13530_i0 PRJNA692200 13587 196 1.632653 3.19999988 Actinomycetota bacterium 2900548 Bacteria Bacteria 41.6 0.0471   NR MEY3805953.1 2900548 g13530 i0 68 0.38265306122449 25 8 38.3 0 51 125 10 34 MEY3805953.1 Bacterial regulatory protein luxR family [Actinomycetota bacterium] diamond 75 41.6 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28882512 28882512 PRJNA692200_S_NODE_13288_length_198_cov_1.154362_g13231_i0 PRJNA692200 13288 198 1.154362 2.28563676 Bifidobacterium breve 1685 Bacteria Bacteria 45.4 0.00193   NR AUD81564.1 1685 g13231 i0 54.5 0.5 33 15 50 0 154 56 12 44 AUD81564.1 hypothetical protein NRBB51_1480 [Bifidobacterium breve] diamond 99 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve
29608447 29608447 PRJNA692200_S_NODE_18170_length_173_cov_1.241935_g18113_i0 PRJNA692200 18170 173 1.241935 2.14854755 Nonomuraea sp. SBT364 1580530 Bacteria Bacteria 56.6 9.44e-8   NR WP_063780813.1 1580530 g18113 i0 56.6 0.919075144508671 53 23 91.9 0 11 169 125 177 WP_063780813.1 lysoplasmalogenase [Nonomuraea sp. SBT364] diamond 159 56.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea sp. SBT364
30283898 30283898 PRJNA692200_S_NODE_14892_length_188_cov_2.762590_g14835_i0 PRJNA692200 14892 188 2.76259 5.1936692 Bacteria 2 Bacteria Bacteria 52 9.61e-6   NR WP_299569843.1 259311 g14835 i0 42.9 15.3829787234043 56 32 89.4 0 187 20 356 411 WP_299569843.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [uncultured Williamsia sp.] diamond 2892 52.4 0.99236641221374 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia uncultured Williamsia sp.
31378288 31378288 PRJNA692200_S_NODE_2336_length_365_cov_3.085443_g2279_i0 PRJNA692200 2336 365 3.085443 11.26186695 Actinoalloteichus hymeniacidonis 340345 Bacteria Bacteria 49.7 4.57e-4   NR WP_069845689.1 340345 g2279 i0 46 1.1013698630137 50 27 41.1 0 359 210 215 264 WP_069845689.1 S49 family peptidase [Actinoalloteichus hymeniacidonis] diamond 402 49.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinoalloteichus Actinoalloteichus hymeniacidonis
31725997 31725997 PRJNA692200_S_NODE_16997_length_178_cov_1.922481_g16940_i0 PRJNA692200 16997 178 1.922481 3.42201618 Actinomycetota bacterium 2900548 Bacteria Bacteria 41.6 0.0415   NR MBW3669565.1 2900548 g16940 i0 40.4 0.960674157303371 57 27 89.3 2 16 174 585 638 MBW3669565.1 LuxR C-terminal-related transcriptional regulator [Actinomycetota bacterium] diamond 171 41.6 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;