RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA692200", tax_kingdom = "Thermotogati" and tax_phylum = "Deinococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA692200 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4501000 4501000 PRJNA692200_S_NODE_7604_length_248_cov_2078.673367_g7547_i0 PRJNA692200 7604 248 2078.673367 5155.10995016 Deinococcus peraridilitoris 432329 Bacteria Bacteria 174 4.59e-39   NTclustered gi|429128598|gb|CP003382.1| 937777 g7547 i0 82.547 57.2056451612903 212 23 81 10 45 246 1140366 1140573 Deinococcus peraridilitoris DSM 19664, complete genome blastn 14187 174 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus peraridilitoris
29967592 29967592 PRJNA692200_S_NODE_20811_length_165_cov_0.887931_g20754_i0 PRJNA692200 20811 165 0.887931 1.46508615 Bacteria 2 Bacteria Bacteria 55.5 1.37e-7   NR WP_013615404.1 55148 g20754 i0 58.3 1.63636363636364 48 19 87.3 1 162 19 19 65 WP_013615404.1 twin-arginine translocase TatA/TatE family subunit [Deinococcus proteolyticus] diamond 270 55.5 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus proteolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;