RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA692200", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA692200 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18524896 18524896 PRJNA692200_S_NODE_5395_length_281_cov_1477.422414_g5338_i0 PRJNA692200 5395 281 1477.422414 4151.55698334 Hydrogenimonas thermophila 223786 Bacteria Bacteria 91.6 5.49e-14   NTclustered gi|2329051133|dbj|AP026673.1| 223786 g5338 i0 76.963 91.5266903914591 191 25 66 13 54 235 2072059 2072239 Hydrogenimonas thermophila JCM 11971 DNA, complete sequence blastn 25719 91.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Hydrogenimonadaceae Hydrogenimonas Hydrogenimonas thermophila
31662669 31662669 PRJNA692200_S_NODE_13137_length_199_cov_1.000000_g13080_i0 PRJNA692200 13137 199 1 1.99 Sulfurovum zhangzhouensis 3019067 Bacteria Bacteria 43.5 0.00466   NR WP_289413462.1 3019067 g13080 i0 48.8 0.648241206030151 43 20 61.8 1 76 198 14 56 WP_289413462.1 hypothetical protein [Sulfurovum zhangzhouensis] diamond 129 43.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum zhangzhouensis
31674038 31674038 PRJNA692200_S_NODE_10857_length_216_cov_0.916168_g10800_i0 PRJNA692200 10857 216 0.916168 1.97892288 Bacteria candidate phyla 1783234 Bacteria Bacteria 73.6 2.94e-13   NR WP_066168113.1 28198 g10800 i0 57.1 10.4861111111111 63 23 81.9 1 216 40 303 365 WP_066168113.1 redox-regulated ATPase YchF [Aliarcobacter cryaerophilus] diamond 2265 73.9 0.995940460081191 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;