RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA692200", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA692200 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4500726 4500726 PRJNA692200_S_NODE_18884_length_170_cov_1.479339_g18827_i0 PRJNA692200 18884 170 1.479339 2.5148763 Anneissia japonica 1529436 Echinodermata other_Eukaryota 52.8 0.014   NTclustered gi|1826640927|ref|XM_033252647.1| 1529436 g18827 i0 92.105 0.670588235294118 38 1 22 2 8 45 2406 2441 PREDICTED: Anneissia japonica galanin receptor type 1-like (LOC117110061), transcript variant X3, mRNA blastn 114 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
14701699 14701699 PRJNA692200_S_NODE_18532_length_171_cov_2.713115_g18475_i0 PRJNA692200 18532 171 2.713115 4.63942665 Lytechinus pictus 7653 Echinodermata other_Eukaryota 56.5 0.001   NTclustered gi|2707410191|ref|XM_064094871.1| 7653 g18475 i0 96.97 2.48538011695906 33 1 19 0 16 48 4399 4431 PREDICTED: Lytechinus pictus nucleolar protein dao-5-like (LOC129254200), mRNA blastn 425 56.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
27915013 27915013 PRJNA692200_S_NODE_10365_length_220_cov_1.660819_g10308_i0 PRJNA692200 10365 220 1.660819 3.6538018 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 42.4 0.0319   NR XP_011683642.1 7668 g10308 i0 75 7.77272727272727 20 5 27.3 0 12 71 200 219 XP_011683642.1 parkin coregulated gene protein homolog [Strongylocentrotus purpuratus] diamond 1710 42.7 0.992974238875878 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;