RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA692200", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA692200 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8832200 8832200 PRJNA692200_S_NODE_15027_length_187_cov_8.369565_g14970_i0 PRJNA692200 15027 187 8.369565 15.65108655 Schizostauron 1880599 SAR_Eukaryotes SAR_Eukaryotes 270 4.0599999999999996e-68   NTclustered gi|2633519340|gb|OR805654.1| 2126271 g14970 i0 95.833 122.604278074866 168 6 91 1 1 168 121812 121978 Naviculales sp. strain SZCZO2114 plastid, complete genome blastn 22927 270 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales     Naviculales sp.
16482130 16482130 PRJNA692200_S_NODE_8873_length_234_cov_2130.351351_g8816_i0 PRJNA692200 8873 234 2130.351351 4985.02216134 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 324 4.02e-84   NTclustered gi|1735236684|ref|NC_044465.1| 1487565 g8816 i0 95.98 169.529914529915 199 8 85 0 36 234 69064 68866 Halamphora coffeaeformis chloroplast, complete genome blastn 39670 324 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Amphipleuraceae Halamphora Halamphora coffeiformis
20305651 20305651 PRJNA692200_S_NODE_17156_length_177_cov_3.234375_g17099_i0 PRJNA692200 17156 177 3.234375 5.72484375 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 261 2.28e-65   NTclustered gi|1118344172|gb|KY354249.1| 1928920 g17099 i0 98.649 81.8022598870056 148 1 84 1 30 177 1016 870 Bacillariophyceae sp. YS-2016a strain HYU-D001 small subunit ribosomal RNA gene, partial sequence blastn 14479 261 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae       Bacillariophyceae sp. YS-2016a
23625579 23625579 PRJNA692200_S_NODE_3919_length_313_cov_1469.420455_g3862_i0 PRJNA692200 3919 313 1469.420455 4599.28602415 Bacillariophyceae sp. YS-2016a 1928920 SAR_Eukaryotes SAR_Eukaryotes 453 6.87e-123   NTclustered gi|1118344170|gb|KY354247.1| 1928920 g3862 i0 97.368 85.073482428115 266 7 85 0 48 313 313 48 Bacillariophyceae sp. YS-2016a strain HYU-D001 large subunit ribosomal RNA gene, partial sequence blastn 26628 453 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae       Bacillariophyceae sp. YS-2016a
28219316 28219316 PRJNA692200_S_NODE_17246_length_177_cov_1.359375_g17189_i0 PRJNA692200 17246 177 1.359375 2.40609375 Pseudo-nitzschia multistriata 183589 SAR_Eukaryotes SAR_Eukaryotes 57 1.4e-7   NR VEU43691.1 183589 g17189 i0 56.4 0.932203389830508 55 20 89.8 3 5 163 443 495 VEU43691.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 165 57 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
31389662 31389662 PRJNA692200_S_NODE_21076_length_164_cov_1.521739_g21019_i0 PRJNA692200 21076 164 1.521739 2.49565196 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 46.2 7.46e-4   NR KAL3766746.1 382360 g21019 i0 44.2 1.90243902439024 52 29 95.1 0 164 9 219 270 KAL3766746.1 hypothetical protein ACHAWO_005144 [Cyclotella atomus] diamond 312 46.2 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella atomus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;