RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA692200" and tax_clade = "Apusozoa"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA692200 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10876571 10876571 PRJNA692200_S_NODE_10469_length_219_cov_2.070588_g10412_i0 PRJNA692200 10469 219 2.070588 4.53458772 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 405 1.29e-108   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g10412 i0 100 79.9315068493151 219 0 100 0 1 219 3276 3058 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17505 405 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
30746096 30746096 PRJNA692200_S_NODE_7994_length_244_cov_2.266667_g7937_i0 PRJNA692200 7994 244 2.266667 5.53066748 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 46.2 0.0022   NR XP_013762925.1 461836 g7937 i0 73.1 0.319672131147541 26 7 32 0 1 78 302 327 XP_013762925.1 cruzipain [Thecamonas trahens ATCC 50062] diamond 78 46.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32010860 32010860 PRJNA692200_S_NODE_9618_length_227_cov_3.601124_g9561_i0 PRJNA692200 9618 227 3.601124 8.17455148 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 46.6 0.00137   NR XP_013757617.1 461836 g9561 i0 34.3 1.98237885462555 67 39 88.5 1 11 211 1022 1083 XP_013757617.1 HECT domain containing 3 [Thecamonas trahens ATCC 50062] diamond 450 46.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;