RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA692200", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA692200 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12151852 12151852 PRJNA692200_S_NODE_15830_length_184_cov_1.148148_g15773_i0 PRJNA692200 15830 184 1.148148 2.11259232 Korotnevella venosa 1970483 Discosea other_Eukaryota 135 1.51e-27   NTclustered gi|1047608806|gb|KU681502.1| 1970483 g15773 i0 91.176 50.8152173913044 102 6 54 2 80 178 850 951 Korotnevella venosa clone 154.2_63.5 18S ribosomal RNA gene, complete sequence blastn 9350 135 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella venosa
18524570 18524570 PRJNA692200_S_NODE_13675_length_195_cov_5.589041_g13618_i0 PRJNA692200 13675 195 5.589041 10.89862995 Korotnevella jeppesenii 1678066 Discosea other_Eukaryota 335 1.4899999999999997e-87   NTclustered gi|861553759|gb|KP719186.1| 1678066 g13618 i0 98.93 39.7333333333333 187 2 96 0 7 193 264 78 Korotnevella jeppesenii strain A4DVDPB clone 4 small subunit ribosomal RNA gene, partial sequence blastn 7748 335 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella jeppesenii
20305680 20305680 PRJNA692200_S_NODE_7636_length_248_cov_4.045226_g7579_i0 PRJNA692200 7636 248 4.045226 10.03216048 Ripella 1217112 Discosea other_Eukaryota 187 5.8899999999999985e-43   NTclustered gi|1269228365|gb|MF683490.1| 2047821 g7579 i0 82.273 78.1290322580645 220 35 88 4 31 247 1382 1164 Ripella platypodia clone 26.9.22 18S ribosomal RNA gene, partial sequence blastn 19376 187 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
21075311 21075311 PRJNA692200_S_NODE_3717_length_318_cov_6.910781_g3660_i0 PRJNA692200 3717 318 6.910781 21.97628358 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 151 2.1799999999999994e-42   NR XP_004356622.1 1257118 g3660 i0 83.5 0.80188679245283 85 14 80.2 0 316 62 231 315 XP_004356622.1 mitochondrial phosphate transporter, putative [Acanthamoeba castellanii str. Neff] diamond 255 151 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24898921 24898921 PRJNA692200_S_NODE_14620_length_190_cov_1.014184_g14563_i0 PRJNA692200 14620 190 1.014184 1.9269496 Acanthamoeba pearcei 65662 Discosea other_Eukaryota 163 7.23e-36   NTclustered gi|291092747|gb|GU573879.1| 65662 g14563 i0 83.721 91.9631578947368 172 28 91 0 10 181 131 302 Acanthamoeba pearcei isolate C18/PHTC 18S ribosomal RNA gene, partial sequence blastn 17473 163 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba pearcei
30462158 30462158 PRJNA692200_S_NODE_17893_length_174_cov_1.512000_g17836_i0 PRJNA692200 17893 174 1.512 2.63088 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 58.9 2.8e-8   NR XP_004368092.1 1257118 g17836 i0 59.2 0.844827586206897 49 18 84.5 1 173 27 479 525 XP_004368092.1 GTPase of unknown function subfamily protein [Acanthamoeba castellanii str. Neff] diamond 147 58.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;