RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA691918" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA691918 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7051114 7051114 PRJNA691918_S_NODE_386_length_164_cov_10.639098_g385_i0 PRJNA691918 386 164 10.639098 17.44812072 Petalomonas cantuscygni 56452 Euglenozoa other_Eukaryota 246 5.8499999999999995e-61   NTclustered gi|1803019099|gb|MT007871.1| 56452 g385 i0 97.241 25.5548780487805 145 4 88 0 1 145 1165 1021 Petalomonas cantuscygni strain CCAP 1259/1 small subunit ribosomal RNA gene, partial sequence blastn 4191 246 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas cantuscygni
19799407 19799407 PRJNA691918_S_NODE_436_length_153_cov_2.762295_g435_i0 PRJNA691918 436 153 2.762295 4.22631135 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 254 3.2e-63   NTclustered gi|68271543|gb|DQ086724.1| 127150 g435 i0 96.732 142.150326797386 153 4 100 1 1 153 468 317 Rhynchomonas nasuta isolate RHYNCHO large subunit ribosomal RNA gene, partial sequence blastn 21749 254 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
19799408 19799408 PRJNA691918_S_NODE_56_length_250_cov_14020.913242_g55_i0 PRJNA691918 56 250 14020.913242 35052.283105 uncultured kinetoplastid 204529 Euglenozoa other_Eukaryota 283 7.379999999999999e-72   NTclustered gi|375343254|gb|JN629338.1| 204529 g55 i0 92.5 79.424 200 11 80 4 2 200 316 512 Uncultured kinetoplastid clone A3_E1 18S ribosomal RNA gene, partial sequence blastn 19856 283 1 Eukaryota Discoba   Euglenozoa Kinetoplastea       uncultured kinetoplastid
22349826 22349826 PRJNA691918_S_NODE_118_length_218_cov_16274.860963_g117_i0 PRJNA691918 118 218 16274.860963 35479.19689934 Neobodo sp. 2815825 Euglenozoa other_Eukaryota 148 2.3899999999999993e-31   NTclustered gi|1996609214|gb|MW694333.1| 2815825 g117 i0 90.991 19.2247706422018 111 8 50 1 47 155 775 665 Neobodo sp. isolate G08 small subunit ribosomal RNA gene, partial sequence blastn 4191 148 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;