RNAquarium Metadata Server
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contig_metadata

17 rows where bioproject = "PRJNA691918" and tax_kingdom = "Fungi"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Fungi · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA691918 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1948490 1948490 PRJNA691918_S_NODE_82_length_233_cov_14891.638614_g81_i0 PRJNA691918 82 233 14891.638614 34697.51797062 uncultured fungus 175245 Fungi Fungi 283 6.789999999999999e-72   NTclustered gi|85700830|gb|DQ365437.1| 175245 g81 i0 94.536 78.5579399141631 183 10 79 0 48 230 345 163 Uncultured compost fungus clone 3F02 26S ribosomal RNA gene, partial sequence blastn 18304 283 1 Eukaryota Opisthokonta Fungi           uncultured fungus
4500490 4500490 PRJNA691918_S_NODE_104_length_223_cov_15675.734375_g103_i0 PRJNA691918 104 223 15675.734375 34956.88765625 uncultured fungus 175245 Fungi Fungi 294 2.98e-75   NTclustered gi|2159203107|emb|OU941535.1| 175245 g103 i0 97.661 28.9013452914798 171 4 77 0 5 175 582 752 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus02829 blastn 6445 294 1 Eukaryota Opisthokonta Fungi           uncultured fungus
4500491 4500491 PRJNA691918_S_NODE_124_length_217_cov_21.403226_g123_i0 PRJNA691918 124 217 21.403226 46.44500042 uncultured fungus 175245 Fungi Fungi 80.5 8.79e-11   NTclustered gi|189032681|gb|EU691383.1| 175245 g123 i0 80 0.506912442396313 110 21 50 1 15 123 378 269 Uncultured soil fungus clone BPAGM2T0_4G 28S ribosomal RNA gene, partial sequence blastn 110 80.5 1 Eukaryota Opisthokonta Fungi           uncultured fungus
7051112 7051112 PRJNA691918_S_NODE_26_length_283_cov_10647.571429_g25_i0 PRJNA691918 26 283 10647.571429 30132.62714407 Blastocladiella emersonii 4808 Fungi Fungi 121 7.059999999999999e-23   NTclustered gi|2440036|emb|X90411.1| 4808 g25 i0 97.183 25.13074204947 71 2 25 0 213 283 3376 3306 B.emersonii DNA for 28S ribosomal RNA gene blastn 7112 121 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
7051115 7051115 PRJNA691918_S_NODE_406_length_158_cov_11.897638_g405_i0 PRJNA691918 406 158 11.897638 18.79826804 uncultured fungus 175245 Fungi Fungi 171 3.46e-38   NTclustered gi|2159201598|emb|OU940632.1| 175245 g405 i0 93.103 74.4050632911392 116 8 73 0 1 116 1849 1734 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01926 blastn 11756 171 1 Eukaryota Opisthokonta Fungi           uncultured fungus
10876536 10876536 PRJNA691918_S_NODE_189_length_197_cov_18431.036145_g188_i0 PRJNA691918 189 197 18431.036145 36309.14120565 uncultured fungus 175245 Fungi Fungi 219 1.59e-52   NTclustered gi|375156252|gb|JQ311601.1| 175245 g188 i0 93.793 24.8274111675127 145 9 74 0 51 195 298 154 Uncultured soil fungus clone OTU97-798 28S ribosomal RNA gene, partial sequence blastn 4891 219 1 Eukaryota Opisthokonta Fungi           uncultured fungus
10876539 10876539 PRJNA691918_S_NODE_29_length_281_cov_12246.192000_g28_i0 PRJNA691918 29 281 12246.192 34411.79952 uncultured fungus 175245 Fungi Fungi 311 3.87e-80   NTclustered gi|2159203701|emb|OU942103.1| 175245 g28 i0 91.026 33.3629893238434 234 16 82 3 2 232 872 1103 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus03398 blastn 9375 311 1 Eukaryota Opisthokonta Fungi           uncultured fungus
10876540 10876540 PRJNA691918_S_NODE_49_length_255_cov_13701.200893_g48_i0 PRJNA691918 49 255 13701.200893 34938.06227715 Microsporidium sp. LVPEI.SMW V3S1-FR 1734473 Fungi Fungi 357 4.3799999999999997e-94   NTclustered gi|937656209|gb|KR303710.1| 1734473 g48 i0 98.049 81.1450980392157 205 4 80 0 1 205 765 969 Microsporidium sp. LVPEI.SMW V3S1-FR small subunit ribosomal RNA gene, partial sequence blastn 20692 357 1 Eukaryota Opisthokonta Fungi Microsporidia       Microsporidium Microsporidium sp. LVPEI.SMW V3S1-FR
12151684 12151684 PRJNA691918_S_NODE_210_length_193_cov_18879.777778_g209_i0 PRJNA691918 210 193 18879.777778 36437.97111154 uncultured fungus 175245 Fungi Fungi 213 7.21e-51   NTclustered gi|2159201455|emb|OU940489.1| 175245 g209 i0 93.151 37.7668393782383 146 8 75 2 1 144 805 950 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01783 blastn 7289 213 1 Eukaryota Opisthokonta Fungi           uncultured fungus
13426258 13426258 PRJNA691918_S_NODE_191_length_197_cov_16156.192771_g190_i0 PRJNA691918 191 197 16156.192771 31827.69975887 uncultured fungus 175245 Fungi Fungi 259 9.37e-65   NTclustered gi|2159201594|emb|OU940628.1| 175245 g190 i0 98.63 23.3756345177665 146 2 74 0 49 194 994 849 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01921 blastn 4605 259 1 Eukaryota Opisthokonta Fungi           uncultured fungus
13426259 13426259 PRJNA691918_S_NODE_211_length_193_cov_18543.839506_g210_i0 PRJNA691918 211 193 18543.839506 35789.61024658 uncultured fungus 175245 Fungi Fungi 254 4.25e-63   NTclustered gi|2159202234|emb|OU940662.1| 175245 g210 i0 97.945 22.5958549222798 146 3 76 0 45 190 243 98 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01956 blastn 4361 254 1 Eukaryota Opisthokonta Fungi           uncultured fungus
13933204 13933204 PRJNA691918_S_NODE_111_length_221_cov_9.810526_g110_i0 PRJNA691918 111 221 9.810526 21.68126246 Mycosphaerellales 2726947 Fungi Fungi 379 7.909999999999998e-101   NTclustered gi|375156288|gb|JQ311637.1| 175245 g110 i0 97.727 99.5475113122172 220 5 99 0 2 221 11 230 Uncultured soil fungus clone OTU97-83 28S ribosomal RNA gene, partial sequence blastn 22000 379 1 Eukaryota Opisthokonta Fungi           uncultured fungus
15975192 15975192 PRJNA691918_S_NODE_393_length_162_cov_11.931298_g392_i0 PRJNA691918 393 162 11.931298 19.32870276 uncultured fungus 175245 Fungi Fungi 171 3.57e-38   NTclustered gi|2159204111|emb|OU942513.1| 175245 g392 i0 85.976 100.524691358025 164 18 100 4 1 162 1025 865 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus03807 blastn 16285 171 1 Eukaryota Opisthokonta Fungi           uncultured fungus
21581448 21581448 PRJNA691918_S_NODE_237_length_188_cov_19116.089172_g236_i0 PRJNA691918 237 188 19116.089172 35938.24764336 Fungi 4751 Fungi Fungi 261 2.46e-65   NTclustered gi|1601879252|gb|MH751906.1| 5341 g236 i0 99.306 76.0957446808511 144 1 77 0 1 144 381 524 Agaricus bisporus 18S ribosomal RNA gene, partial sequence blastn 14306 261 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Agaricaceae Agaricus Agaricus bisporus
22349832 22349832 PRJNA691918_S_NODE_378_length_166_cov_13.755556_g377_i0 PRJNA691918 378 166 13.755556 22.83422296 uncultured fungus 175245 Fungi Fungi 165 1.7100000000000002e-36   NTclustered gi|2159201850|emb|OU939863.1| 175245 g377 i0 85.625 85.6265060240964 160 20 95 3 8 165 879 1037 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01156 blastn 14214 165 1 Eukaryota Opisthokonta Fungi           uncultured fungus
25405681 25405681 PRJNA691918_S_NODE_220_length_192_cov_19047.931677_g219_i0 PRJNA691918 220 192 19047.931677 36572.02881984 Microsporidium 144516 Fungi Fungi 261 2.52e-65   NTclustered gi|267672585|gb|FJ820195.1| 546760 g219 i0 99.306 74.9375 144 1 75 0 49 192 679 536 Uncultured Microsporidia clone B1FAS7 FAS1 small subunit ribosomal RNA gene, partial sequence blastn 14388 261 1 Eukaryota Opisthokonta Fungi Microsporidia         uncultured Microsporidia
30714424 30714424 PRJNA691918_S_NODE_14_length_310_cov_32.956989_g13_i0 PRJNA691918 14 310 32.956989 102.1666659 Funneliformis geosporum 1117311 Fungi Fungi 58.5 8.78e-9   NR CAI2174852.1 1117311 g13 i0 62.2 0.435483870967742 45 17 43.5 0 263 129 11 55 CAI2174852.1 9324_t:CDS:2 [Funneliformis geosporum] diamond 135 58.5 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Glomerales Glomeraceae Funneliformis Funneliformis geosporum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;