RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA691918" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA691918 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
672508 672508 PRJNA691918_S_NODE_201_length_194_cov_18764.883436_g200_i0 PRJNA691918 201 194 18764.883436 36403.87386584 Vannella samoroda 2591203 Discosea other_Eukaryota 244 2.57e-60   NTclustered gi|1759423687|gb|MK992743.1| 2591203 g200 i0 96.599 75.5360824742268 147 5 76 0 48 194 464 318 Vannella samoroda strain RC CCMAm 0457 clone 6 18S small subunit ribosomal RNA gene, partial sequence blastn 14654 244 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella samoroda
9600938 9600938 PRJNA691918_S_NODE_408_length_158_cov_7.110236_g407_i0 PRJNA691918 408 158 7.1102359999999996 11.23417288 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 180 5.74e-41   NTclustered gi|511487963|gb|JX898537.1| 1260765 g407 i0 91.045 14.6518987341772 134 10 85 2 3 136 295 164 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 2315 180 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
21074944 21074944 PRJNA691918_S_NODE_77_length_235_cov_6.588235_g76_i0 PRJNA691918 77 235 6.588235 15.48235225 Vannella mustalahtiana 2841357 Discosea other_Eukaryota 429 8.33e-116   NTclustered gi|2047416623|gb|MZ329078.1| 2841357 g76 i0 99.574 101.48085106383 235 1 100 0 1 235 1037 803 Vannella sp. AKud-2021a clone NGD3297 small subunit ribosomal RNA gene, partial sequence blastn 23848 429 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella mustalahtiana
24131121 24131121 PRJNA691918_S_NODE_439_length_152_cov_13.272727_g438_i0 PRJNA691918 439 152 13.272727 20.17454504 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 261 1.9e-65   NTclustered gi|441475833|emb|FN562425.4| 688089 g438 i0 98.013 11.8092105263158 151 2 99 1 3 152 540 390 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 1795 261 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA36

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;