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contig_metadata

17 rows where bioproject = "PRJNA690592", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 17 ✖

tax_clade 1

  • delta/epsilon subdivisions · 17 ✖

bioproject 1

  • PRJNA690592 · 17 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14700561 14700561 PRJNA690592_S_NODE_29292_length_558_cov_2.072165_g28292_i0 PRJNA690592 29292 558 2.072165 11.5626807 Persicimonas caeni 2292766 Bacteria Bacteria 69.4 5.46e-7   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g28292 i0 89.091 0.263440860215054 55 6 10 0 1 55 7226688 7226742 Persicimonas caeni strain YN101 chromosome blastn 147 69.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
17249586 17249586 PRJNA690592_S_NODE_38234_length_494_cov_7.308789_g37223_i0 PRJNA690592 38234 494 7.308789 36.10541766 uncultured delta proteobacterium 34034 Bacteria Bacteria 647 0   NTclustered gi|374854163|dbj|AP011765.1| 34034 g37223 i0 90.342 201.779352226721 497 42 100 6 1 494 14674 14181 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 99679 647 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
19030646 19030646 PRJNA690592_S_NODE_153555_length_274_cov_1.517413_g152541_i0 PRJNA690592 153555 274 1.517413 4.15771162 Myxococcota 2818505 Bacteria Bacteria 388 1.69e-103   NTclustered gi|386873771|gb|JQ624277.1| 34034 g152541 i0 92.364 100.386861313869 275 17 99 4 1 273 402 674 Uncultured delta proteobacterium clone OTU-2-AFB 16S ribosomal RNA gene, partial sequence blastn 27506 388 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27177065 27177065 PRJNA690592_S_NODE_136902_length_288_cov_1.400000_g135888_i0 PRJNA690592 136902 288 1.4 4.032 Bradymonadales bacterium 2099667 Bacteria Bacteria 49.7 2.3e-4   NR MBN1946190.1 2099667 g135888 i0 36.4 1.11458333333333 55 35 57.3 0 2 166 721 775 MBN1946190.1 methionine--tRNA ligase [Bradymonadales bacterium] diamond 321 49.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
27662679 27662679 PRJNA690592_S_NODE_110764_length_314_cov_2.128631_g109750_i0 PRJNA690592 110764 314 2.128631 6.68390134 Myxococcota 2818505 Bacteria Bacteria 70.9 2.66e-12   NR OGQ91000.1 1797895 g109750 i0 41.1 3 107 52 99.4 3 2 313 54 152 OGQ91000.1 MAG: hypothetical protein A2289_00830 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 942 70.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
27840384 27840384 PRJNA690592_S_NODE_193984_length_248_cov_1.422857_g192970_i0 PRJNA690592 193984 248 1.422857 3.52868536 Deltaproteobacteria bacterium SM23_61 1703399 Bacteria Bacteria 43.5 0.0197   NR KPK87443.1 1703399 g192970 i0 51.2 0.495967741935484 41 19 49.6 1 15 137 216 255 KPK87443.1 MAG: 2-ketoisovalerate ferredoxin oxidoreductase [Deltaproteobacteria bacterium SM23_61] diamond 123 43.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium SM23_61
28250854 28250854 PRJNA690592_S_NODE_142726_length_283_cov_1.271429_g141712_i0 PRJNA690592 142726 283 1.271429 3.59814407 Persicimonas sp. 2766932 Bacteria Bacteria 81.6 5.85e-16   NR MFP4598647.1 2766932 g141712 i0 47.9 1.96113074204947 94 47 99.6 1 282 1 52 143 MFP4598647.1 DMT family transporter [Persicimonas sp.] diamond 555 81.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas sp.
29083482 29083482 PRJNA690592_S_NODE_94828_length_335_cov_0.881679_g93814_i0 PRJNA690592 94828 335 0.881679 2.95362465 Bacteria 2 Bacteria Bacteria 69.7 2.04e-13   NR PIU86675.1 1973970 g93814 i0 68.2 0.770149253731343 44 14 39.4 0 307 176 1 44 PIU86675.1 MAG: hypothetical protein COS67_01255, partial [Deltaproteobacteria bacterium CG06_land_8_20_14_3_00_44_19] diamond 258 69.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG06_land_8_20_14_3_00_44_19
29292900 29292900 PRJNA690592_S_NODE_152609_length_275_cov_1.143564_g151595_i0 PRJNA690592 152609 275 1.143564 3.144801 Deltaproteobacteria bacterium CG23_combo_of_CG 2026735 Bacteria Bacteria 43.9 0.018   NR PIP43900.1 1973981 g151595 i0 34.5 0.6 55 35 58.9 1 45 206 21 75 PIP43900.1 MAG: hypothetical protein COX17_04520 [Deltaproteobacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_60_8] diamond 165 43.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_60_8
29356229 29356229 PRJNA690592_S_NODE_216589_length_240_cov_2.305389_g215575_i0 PRJNA690592 216589 240 2.305389 5.5329336 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21 2013749 Bacteria Bacteria 46.2 5.89e-4   NR PKN23782.1 2013749 g215575 i0 42.9 0.7 56 28 65 1 10 165 29 84 PKN23782.1 MAG: hypothetical protein CVU64_23660 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21] diamond 168 46.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21
30082369 30082369 PRJNA690592_S_NODE_52812_length_429_cov_3.174157_g51798_i0 PRJNA690592 52812 429 3.174157 13.61713353 Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 1797895 Bacteria Bacteria 106 2.46e-25   NR OGQ91000.1 1797895 g51798 i0 42.9 1.97202797202797 140 76 97.9 2 421 2 54 189 OGQ91000.1 MAG: hypothetical protein A2289_00830 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 846 106 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
30114005 30114005 PRJNA690592_S_NODE_197912_length_247_cov_0.885057_g196898_i0 PRJNA690592 197912 247 0.885057 2.18609079 Persicimonas caeni 2292766 Bacteria Bacteria 97.1 2.92e-21   NR WP_141201199.1 2292766 g196898 i0 59.3 4.89473684210526 81 33 98.4 0 247 5 377 457 WP_141201199.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [Persicimonas caeni] diamond 1209 97.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
30967243 30967243 PRJNA690592_S_NODE_13954_length_786_cov_2.208976_g13087_i0 PRJNA690592 13954 786 2.208976 17.36255136 Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_6 2026735 Bacteria Bacteria 148 2.86e-40   NR OGQ79495.1 1797894 g13087 i0 44.9 0.603053435114504 158 86 60.3 1 312 785 10 166 OGQ79495.1 MAG: hypothetical protein A3F90_11480 [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19] diamond 474 148 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19
31389634 31389634 PRJNA690592_S_NODE_184056_length_252_cov_1.290503_g183042_i0 PRJNA690592 184056 252 1.290503 3.25206756 Bacteria 2 Bacteria Bacteria 89.4 1.58e-19   NR OGQ24388.1 1797848 g183042 i0 53 7.90476190476191 83 39 98.8 0 2 250 140 222 OGQ24388.1 MAG: hypothetical protein A2138_06805 [Deltaproteobacteria bacterium RBG_16_71_12] diamond 1992 89.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_71_12
31852478 31852478 PRJNA690592_S_NODE_60177_length_406_cov_1.042042_g59163_i0 PRJNA690592 60177 406 1.042042 4.23069052 Microvenator marinus 2600177 Bacteria Bacteria 143 1.58e-36   NR WP_146958785.1 2600177 g59163 i0 53.8 5.88916256157635 132 58 97.5 2 397 2 689 817 WP_146958785.1 bifunctional aspartate kinase/diaminopimelate decarboxylase [Microvenator marinus] diamond 2391 143 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
31947178 31947178 PRJNA690592_S_NODE_114397_length_310_cov_1.624473_g113383_i0 PRJNA690592 114397 310 1.624473 5.0358663 Bradymonadales bacterium 2099667 Bacteria Bacteria 60.5 4.95e-8   NR MBN1946190.1 2099667 g113383 i0 33.3 0.958064516129032 99 64 95.8 1 298 2 562 658 MBN1946190.1 methionine--tRNA ligase [Bradymonadales bacterium] diamond 297 60.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
31958783 31958783 PRJNA690592_S_NODE_14957_length_761_cov_3.559593_g14070_i0 PRJNA690592 14957 761 3.559593 27.08850273 delta/epsilon subdivisions 68525 Bacteria Bacteria 150 6.67e-40   NR PJB39919.1 1973967 g14070 i0 40.7 10.3521681997372 236 110 91.9 7 759 61 93 301 PJB39919.1 MAG: hypothetical protein CO108_16020 [Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12] diamond 7878 150 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;