RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA690592" and tax_clade = "SAR202 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 3 ✖

bioproject 1

  • PRJNA690592 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29198492 29198492 PRJNA690592_S_NODE_75869_length_367_cov_2.057823_g74855_i0 PRJNA690592 75869 367 2.057823 7.55221041 SAR202 cluster bacterium 2030829 Bacteria Bacteria 85.1 1.75e-17   NR MQG47035.1 2030829 g74855 i0 39.8 1.88010899182561 118 68 95.6 2 17 367 9 124 MQG47035.1 50S ribosomal protein L4 [SAR202 cluster bacterium] diamond 690 85.1 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
30746012 30746012 PRJNA690592_S_NODE_216914_length_239_cov_2.120482_g215900_i0 PRJNA690592 216914 239 2.120482 5.06795198 SAR202 cluster bacterium 2030829 Bacteria Bacteria 43.5 0.0169   NR MDP7196479.1 2030829 g215900 i0 44.8 0.728033472803347 58 28 67.8 3 7 168 36 93 MDP7196479.1 hypothetical protein [SAR202 cluster bacterium] diamond 174 43.5 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
32200696 32200696 PRJNA690592_S_NODE_87798_length_345_cov_1.893382_g86784_i0 PRJNA690592 87798 345 1.893382 6.5321679 SAR202 cluster bacterium 2030829 Bacteria Bacteria 75.5 3.47e-15   NR MQF98977.1 2030829 g86784 i0 61.3 3.49565217391304 62 24 53.9 0 186 1 7 68 MQF98977.1 30S ribosomal protein S15 [SAR202 cluster bacterium] diamond 1206 75.5 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;