RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA690592", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA690592 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27251871 27251871 PRJNA690592_S_NODE_24043_length_612_cov_4.538033_g23054_i0 PRJNA690592 24043 612 4.538033 27.77276196 Bacteria 2 Bacteria Bacteria 219 6.29e-63   NR NLD91591.1 35828 g23054 i0 58.6 7.12745098039216 181 73 87.7 1 3 539 683 863 NLD91591.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Fibrobacter sp.] diamond 4362 219 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
28913780 28913780 PRJNA690592_S_NODE_10248_length_899_cov_3.151332_g9487_i0 PRJNA690592 10248 899 3.151332 28.33047468 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 55.8 4.6e-5   NR MCU0609556.1 2813024 g9487 i0 29.5 1.46496106785317 156 97 51.4 4 414 875 51 195 MCU0609556.1 FAD/NAD(P)-binding protein [Chitinispirillaceae bacterium] diamond 1317 55.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
30650913 30650913 PRJNA690592_S_NODE_175613_length_258_cov_1.129730_g174599_i0 PRJNA690592 175613 258 1.12973 2.9147034 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 96.7 6.66e-22   NR MBD3419113.1 2663014 g174599 i0 52.3 2.08139534883721 88 40 100 1 1 258 120 207 MBD3419113.1 phospholipase [Chitinivibrionales bacterium] diamond 537 96.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium
32137321 32137321 PRJNA690592_S_NODE_169818_length_262_cov_1.206349_g168804_i0 PRJNA690592 169818 262 1.206349 3.16063438 Fibrobacter sp. 35828 Bacteria Bacteria 94.4 3.3e-20   NR NLG16013.1 35828 g168804 i0 50.5 3.04580152671756 91 41 99.6 1 2 262 317 407 NLG16013.1 carbohydrate-binding protein [Fibrobacter sp.] diamond 798 94.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;