RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA690234", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Negarnaviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA690234 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3221265 3221265 PRJNA690234_P_NODE_3_length_6313_cov_53.996635_g2_i0 PRJNA690234 3 6313 53.996635 3408.80756755 Spring viraemia of carp virus 696863 Viruses Viruses 11293 0   NTclustered gi|89280756|gb|DQ097384.2| 696863 g2 i0 98.955 21.8602882939965 6314 64 100 2 1 6313 11080 4768 Spring viraemia of carp virus isolate A1, complete genome blastn 138004 11293 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
5774027 5774027 PRJNA690234_P_NODE_5_length_5428_cov_1272.131653_g4_i0 PRJNA690234 5 5428 1272.131653 69051.30612484 Spring viraemia of carp virus 696863 Viruses Viruses 4505 0   NTclustered gi|89280756|gb|DQ097384.2| 696863 g4 i0 97.925 38.6226971260133 2603 50 100 4 2709 5307 2761 159 Spring viraemia of carp virus isolate A1, complete genome blastn 209644 4505 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
9599008 9599008 PRJNA690234_P_NODE_8_length_4727_cov_944.341427_g4_i1 PRJNA690234 8 4727 944.341427 44639.01925429 Spring viraemia of carp virus 696863 Viruses Viruses 7978 0   NTclustered gi|89280756|gb|DQ097384.2| 696863 g4 i1 97.922 42.3289612862281 4620 72 100 6 122 4727 159 4768 Spring viraemia of carp virus isolate A1, complete genome blastn 200089 7978 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
18522159 18522159 PRJNA690234_P_NODE_22415_length_268_cov_1.343590_g22048_i0 PRJNA690234 22415 268 1.34359 3.6008212 Spring viraemia of carp virus 696863 Viruses Viruses 368 2.15e-97   NTclustered gi|1063892400|gb|KU230365.1| 696863 g22048 i0 91.418 18 268 23 100 0 1 268 10614 10347 Sprivivirus cyprinus strain 202238 nucleoprotein (NP), phosoprotein (P), matrix protein (M), glycoprotein (G), and polymerase protein (L) genes, complete cds blastn 4824 368 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;