RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA690234", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA690234 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5773838 5773838 PRJNA690234_P_NODE_27485_length_249_cov_0.886364_g27118_i0 PRJNA690234 27485 249 0.886364 2.20704636 uncultured Polyangiaceae bacterium 417999 Bacteria Bacteria 460 3.16e-125   NTclustered gi|304569644|gb|HQ111161.1| 417999 g27118 i0 100 100.606425702811 249 0 100 0 1 249 88 336 Uncultured Polyangiaceae bacterium clone cuticle_16 16S ribosomal RNA gene, partial sequence blastn 25051 460 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   uncultured Polyangiaceae bacterium
29956031 29956031 PRJNA690234_P_NODE_24511_length_256_cov_1.010929_g24144_i0 PRJNA690234 24511 256 1.010929 2.58797824 Archangium sp. 1872627 Bacteria Bacteria 44.3 0.0125   NR WP_407755685.1 1872627 g24144 i0 48.8 0.50390625 43 16 44.5 2 181 68 9 50 WP_407755685.1 DUF6311 domain-containing protein [Archangium sp.] diamond 129 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;