RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA690234" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA690234 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8323283 8323283 PRJNA690234_P_NODE_23407_length_262_cov_1.650794_g23040_i0 PRJNA690234 23407 262 1.650794 4.32508028 Fusobacterium nucleatum 851 Bacteria Bacteria 52.8 0.024   NTclustered gi|2704972056|gb|CP077127.1| 851 g23040 i0 100 0.213740458015267 28 0 11 0 50 77 1472586 1472613 Fusobacterium nucleatum strain KCOM3503 chromosome, complete genome blastn 56 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
17247938 17247938 PRJNA690234_P_NODE_17214_length_306_cov_1.175966_g16847_i0 PRJNA690234 17214 306 1.175966 3.59845596 Cetobacterium somerae 188913 Bacteria Bacteria 525 1.3999999999999994e-144   NTclustered gi|2666488225|gb|CP143319.1| 188913 g16847 i0 97.712 444.928104575163 306 6 100 1 1 306 1318524 1318828 Cetobacterium somerae strain ceto chromosome, complete genome blastn 136148 525 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
28282320 28282320 PRJNA690234_P_NODE_2846_length_782_cov_1.963329_g2518_i0 PRJNA690234 2846 782 1.963329 15.35323278 Fusobacterium periodonticum 860 Bacteria Bacteria 50.4 0.00229   NR WP_204640299.1 860 g2518 i0 28.3 0.556265984654731 145 91 53.7 4 549 130 87 223 WP_204640299.1 cell division protein FtsZ [Fusobacterium periodonticum] diamond 435 50.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;