RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA690234", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA690234 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22347638 22347638 PRJNA690234_P_NODE_28318_length_247_cov_1.816092_g27951_i0 PRJNA690234 28318 247 1.816092 4.48574724 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 270 5.659999999999999e-68   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g27951 i0 86.345 18.4048582995951 249 32 100 2 1 247 3746 3994 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 4546 270 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
22347733 22347733 PRJNA690234_P_NODE_32158_length_239_cov_5.036145_g31791_i0 PRJNA690234 32158 239 5.036145 12.03638655 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 250 7.099999999999999e-62   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g31791 i0 90.526 71.2133891213389 190 16 79 2 1 189 3685 3873 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 17020 250 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
27303788 27303788 PRJNA690234_P_NODE_20083_length_283_cov_1.485714_g19716_i0 PRJNA690234 20083 283 1.485714 4.20457062 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 116 8.88e-28   NR MES1908187.1 1215613 g19716 i0 54.3 6.97526501766784 94 43 99.6 0 283 2 655 748 MES1908187.1 hypothetical protein [Cercozoa sp. M6MM] diamond 1974 116 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;