RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA690234", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA690234 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22347394 22347394 PRJNA690234_P_NODE_17418_length_304_cov_1.350649_g17051_i0 PRJNA690234 17418 304 1.350649 4.10597296 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 510 3.89e-140   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g17051 i0 97.039 235.148026315789 304 8 100 1 1 304 1256 954 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 71485 510 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
32169056 32169056 PRJNA690234_P_NODE_14498_length_333_cov_2.630769_g14131_i0 PRJNA690234 14498 333 2.630769 8.76046077 Candidatus Udaeobacter sp. 2665650 Bacteria Bacteria 45.1 0.00974   NR HEU0273395.1 2665650 g14131 i0 30.7 1.86486486486486 114 66 92.8 3 326 18 40 151 HEU0273395.1 YdeI family protein [Candidatus Udaeobacter sp.] diamond 621 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Candidatus Udaeobacter Candidatus Udaeobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;