RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA690234", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA690234 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1946068 1946068 PRJNA690234_P_NODE_15942_length_318_cov_1.812245_g15575_i0 PRJNA690234 15942 318 1.812245 5.7629391 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 292 1.61e-74   NTclustered gi|2026667530|dbj|LC618030.1| 67003 g15575 i0 83.533 75.4245283018868 334 33 100 19 1 318 5878 6205 Trypanosoma theileri YMG-11 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, ITS5, partial and complete sequence blastn 23985 292 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
5773812 5773812 PRJNA690234_P_NODE_26345_length_251_cov_0.876404_g25978_i0 PRJNA690234 26345 251 0.876404 2.19977404 uncultured kinetoplastid 204529 Euglenozoa other_Eukaryota 424 4.18e-114   NTclustered gi|363903324|gb|JN542574.1| 204529 g25978 i0 97.211 98.9521912350598 251 6 100 1 1 251 1148 1397 Uncultured kinetoplastid clone Kryos_IF_C10 18S ribosomal RNA gene, partial sequence blastn 24837 424 1 Eukaryota Discoba   Euglenozoa Kinetoplastea       uncultured kinetoplastid
30347147 30347147 PRJNA690234_P_NODE_15232_length_325_cov_2.178571_g14865_i0 PRJNA690234 15232 325 2.178571 7.08035575 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 93.6 2.93e-20   NR KAG8339691.1 5699 g14865 i0 41 4.61538461538461 100 59 92.3 0 322 23 214 313 KAG8339691.1 putative GDP-L-fucose synthetase [Trypanosoma vivax] diamond 1500 94.4 0.991525423728813 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;