RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA690124" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA690124 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9598130 9598130 PRJNA690124_P_NODE_48928_length_248_cov_0.891429_g48562_i0 PRJNA690124 48928 248 0.891429 2.21074392 Pseudomonadati 3379134 Bacteria Bacteria 170 3.76e-47   NR HEU0085902.1 2053589 g48562 i0 92.7 6.94354838709677 82 6 99.2 0 3 248 472 553 HEU0085902.1 class I tRNA ligase family protein [Candidatus Paceibacterota bacterium] diamond 1722 170 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29987639 29987639 PRJNA690124_P_NODE_49211_length_248_cov_0.891429_g48845_i0 PRJNA690124 49211 248 0.891429 2.21074392 Minisyncoccota bacterium 2053589 Bacteria Bacteria 110 2.1200000000000003e-27   NR MFA5228638.1 2053589 g48845 i0 67.1 0.955645161290323 79 26 95.6 0 8 244 220 298 MFA5228638.1 site-specific tyrosine recombinase/integron integrase [Candidatus Paceibacterota bacterium] diamond 237 110 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;